Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 1.0e-210 736.5 376 100.0
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 5.5e-196 687.6 376 93.9
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 6.3e-168 594.3 376 80.9
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 2.9e-144 515.8 373 74.0
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 8.9e-138 494.2 375 70.4
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.7e-133 479.9 373 69.2
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 2.3e-133 479.6 372 67.2
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.1e-132 477.2 377 67.1
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.1e-132 477.2 383 65.3
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 9.5e-132 474.2 375 66.7
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.2e-131 473.8 375 66.7
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.4e-130 470.3 377 66.8
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 8.9e-130 467.6 375 67.5
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 4.9e-128 461.8 384 63.5
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 2.4e-127 459.5 377 66.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 7.1e-127 458.0 375 65.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 7.1e-127 458.0 332 68.1
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 2.7e-126 456.1 344 68.6
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 1.7e-125 453.4 370 64.1
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 6.6e-125 451.4 380 65.3
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.5e-124 450.3 337 69.4
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 5.6e-124 448.4 364 67.0
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 1.6e-123 446.8 374 64.2
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.1e-123 446.4 374 65.0
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 2.0e-121 439.9 299 71.9
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 3.7e-120 435.6 369 64.0
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 4.9e-120 435.3 352 65.6
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 8.4e-120 434.5 317 71.6
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 8.4e-120 434.5 310 71.0
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.1e-119 434.1 374 61.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.9e-119 433.3 375 63.2
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 4.1e-119 432.2 385 59.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 9.2e-119 431.0 375 58.4
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.6e-118 430.3 375 62.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.6e-118 430.3 376 62.8
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 7.3e-116 421.4 327 65.4
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.6e-115 420.2 334 62.0
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 6.2e-115 418.3 326 62.9
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 8.1e-115 417.9 342 61.1
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.8e-114 416.8 374 60.7
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 2.4e-114 416.4 380 60.8
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 4.0e-114 415.6 328 65.2
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 4.0e-114 415.6 328 65.2
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 4.0e-114 415.6 374 57.2
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 4.0e-114 415.6 325 65.2
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 5.2e-114 415.2 377 60.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 6.8e-114 414.8 363 63.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.5e-113 413.7 324 67.3
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 3.4e-113 412.5 320 67.8
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 3.4e-113 412.5 335 63.9
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.4e-113 412.1 313 62.9
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.4e-113 412.1 313 62.9
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 4.4e-113 412.1 368 59.8
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 9.9e-113 411.0 367 57.2
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 9.9e-113 411.0 374 60.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.7e-112 410.2 368 60.6
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 2.2e-112 409.8 361 58.2
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 6.4e-112 408.3 322 64.9
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 8.4e-112 407.9 410 55.1
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 8.4e-112 407.9 358 57.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.1e-111 407.5 379 60.2
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.4e-111 407.1 379 56.2
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.9e-111 406.8 374 59.1
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 3.2e-111 406.0 374 59.1
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 5.4e-111 405.2 370 57.6
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.6e-110 403.7 334 61.4
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.7e-110 402.9 324 65.4
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 2.7e-110 402.9 351 61.3
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 3.5e-110 402.5 374 60.2
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 3.0e-109 399.4 379 56.7
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.3e-108 396.0 367 56.9
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.8e-106 390.2 370 55.9
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.2e-105 387.5 340 59.7
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 3.4e-105 386.0 338 60.1
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 1.3e-104 384.0 368 56.0
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 2.9e-104 382.9 330 59.1
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 3.2e-103 379.4 378 55.0
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.5e-102 375.9 390 53.6
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 4.6e-102 375.6 387 53.7
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 6.0e-102 375.2 370 54.1
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 2.5e-100 369.8 375 52.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 2.8e-99 366.3 361 54.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.4e-98 363.2 331 55.6
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.6e-97 359.8 378 55.6
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 7.9e-94 348.2 289 58.8
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.8e-93 347.1 263 62.4
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 3.0e-93 346.3 268 67.9
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.8e-90 337.0 342 52.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.2e-89 334.3 323 54.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 7.6e-89 331.6 321 54.8
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.1e-87 327.8 299 56.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.4e-87 327.4 346 50.6
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.3e-85 320.9 236 66.5
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.8e-83 313.2 377 49.3
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.1e-74 284.6 331 48.3
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 4.5e-73 279.3 292 47.9
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 7.2e-71 271.9 333 44.4
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.7e-70 270.0 312 48.7
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.7e-70 270.0 320 44.1
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 8.8e-69 265.0 235 57.0
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 3.4e-65 253.1 330 46.4
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 3.8e-64 249.6 296 50.7
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 3.8e-64 249.6 334 45.8
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 5.0e-64 249.2 214 60.7
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 5.0e-64 249.2 254 56.3
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 7.2e-63 245.4 334 45.5
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.4e-58 230.3 212 57.5
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.7e-57 225.3 385 39.5
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.3e-56 224.6 259 51.4
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 5.0e-56 222.6 264 53.4
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 4.0e-53 213.0 171 61.4
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 9.4e-47 191.8 286 41.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.2e-43 180.6 118 70.3
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.1e-42 176.4 288 39.2
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 5.9e-41 172.6 118 63.6
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 7.7e-41 172.2 320 35.6
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.2e-39 166.4 134 68.7
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.6e-38 164.5 165 50.3
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 7.5e-36 155.6 141 60.3
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 7.5e-36 155.6 111 64.9
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.8e-35 153.7 144 51.4
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.1e-34 150.2 258 39.9
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.7e-25 120.6 66 80.3
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 8.6e-24 115.5 180 37.2
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 8.0e-22 109.0 69 69.6
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 2.0e-20 104.4 53 83.0
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 4.4e-20 103.2 69 71.0
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 9.8e-20 102.1 113 46.0
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 9.8e-20 102.1 67 68.7
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.7e-19 100.1 70 65.7
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 6.6e-16 89.4 98 51.0
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 9.5e-15 85.5 50 72.0
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 3.4e-12 77.0 131 29.8
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 1.7e-11 74.7 84 48.8
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 9.2e-10 68.9 82 41.5
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 2.7e-09 67.4 60 60.0
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 7.8e-09 65.9 60 60.0


User provided reference genes

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