Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007032 Carpinus fangiana HOM05D003173 ORTHO05D003546 1.1e-104 383.3 194 100.0
Haze_03701 Corylus avellana HOM05D003173 ORTHO05D003546 1.3e-55 220.3 132 87.9
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 7.5e-32 141.4 200 53.5
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 8.9e-25 117.9 191 43.5
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 1.5e-24 117.1 184 45.7
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 3.4e-24 115.9 184 45.7
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.8e-24 115.2 203 42.9
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 1.3e-23 114.0 204 45.1
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 2.2e-23 113.2 180 47.2
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 5.4e-22 108.6 179 46.4
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 1.2e-21 107.5 194 38.7
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.1e-21 106.7 199 42.2
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.5e-21 105.9 195 39.5
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.5e-21 105.9 212 37.3
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 3.5e-21 105.9 175 40.0
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.7e-20 103.6 205 36.6
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 2.3e-20 103.2 184 42.9
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 5.1e-20 102.1 195 37.9
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 6.6e-20 101.7 200 39.0
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.1e-19 100.9 194 39.7
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 1.1e-19 100.9 201 42.8
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 1.5e-19 100.5 186 42.5
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 1.5e-19 100.5 190 41.1
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 3.3e-19 99.4 184 39.7
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.6e-19 98.6 199 41.7
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.6e-19 98.6 199 41.7
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 7.3e-19 98.2 190 40.5
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.6e-19 97.8 195 41.0
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 2.1e-18 96.7 202 37.6
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 6.2e-18 95.1 173 41.0
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.2e-17 92.0 171 39.2
Manes.02G110500 Manihot esculenta HOM05D003173 ORTHO05D003546 5.2e-17 92.0 179 40.2
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 5.2e-17 92.0 188 35.1
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 8.9e-17 91.3 174 39.7
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.2e-16 90.9 174 39.1
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 2.6e-16 89.7 183 39.3
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.6e-16 89.7 185 37.8
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 2.6e-16 89.7 190 36.3
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 3.4e-16 89.4 189 37.0
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 3.4e-16 89.4 193 34.7
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 4.4e-16 89.0 189 36.5
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 4.4e-16 89.0 186 38.7
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.4e-16 89.0 184 38.6
Lalb_Chr05g0229691 Lupinus albus HOM05D003173 ORTHO05D003546 4.4e-16 89.0 179 41.3
Medtr8g074760 Medicago truncatula HOM05D003173 ORTHO05D003546 4.4e-16 89.0 173 39.3
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 4.4e-16 89.0 205 39.5
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 5.8e-16 88.6 196 34.7
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 7.6e-16 88.2 194 36.6
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 7.6e-16 88.2 208 38.5
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.7e-15 87.0 182 37.4
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.7e-15 87.0 184 38.6
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.2e-15 86.7 184 37.5
arahy.Tifrunner.gnm1.ann1.L00MPK Arachis hypogaea HOM05D003173 ORTHO05D003546 2.9e-15 86.3 181 40.3
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.9e-15 86.3 193 36.8
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.9e-15 86.3 188 35.1
Ca_24945_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.8e-15 85.9 182 37.9
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 3.8e-15 85.9 191 37.2
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.8e-15 85.9 193 36.8
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 6.4e-15 85.1 183 38.3
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 6.4e-15 85.1 189 33.9
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 1.1e-14 84.3 200 34.0
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 1.1e-14 84.3 196 35.7
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 1.4e-14 84.0 179 41.3
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 1.9e-14 83.6 212 34.9
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.9e-14 83.6 201 36.8
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.9e-14 83.6 196 36.7
Prupe.7G175300 Prunus persica HOM05D003173 ORTHO05D003546 1.9e-14 83.6 189 37.6
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 2.4e-14 83.2 168 37.5
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 4.2e-14 82.4 191 33.5
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 4.2e-14 82.4 206 35.9
FvH4_1g11060 Fragaria vesca HOM05D003173 ORTHO05D003546 5.4e-14 82.0 179 35.8
FAN28G2348 Fragaria x ananassa HOM05D003173 ORTHO05D003546 5.4e-14 82.0 178 36.0
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 5.4e-14 82.0 203 32.5
Lj4g0000766 Lotus japonicus HOM05D003173 ORTHO05D003546 7.1e-14 81.6 165 37.0
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 7.1e-14 81.6 175 38.3
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 7.1e-14 81.6 195 33.3
Ciclev10027470m.g Citrus clementina HOM05D003173 ORTHO05D003546 9.3e-14 81.3 178 37.1
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.2e-13 80.9 180 38.3
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.2e-13 80.9 193 33.7
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.2e-13 80.9 203 30.5
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.6e-13 80.5 187 34.2
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.1e-13 80.1 192 35.9
Glyma.02G043800 Glycine max HOM05D003173 ORTHO05D003546 2.7e-13 79.7 173 34.1
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.5e-13 79.3 194 34.5
FAN19G2722 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.5e-13 79.3 179 35.2
TPR.G25094 Trifolium pratense HOM05D003173 ORTHO05D003546 3.5e-13 79.3 180 37.2
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 6.0e-13 78.6 192 32.3
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 7.8e-13 78.2 192 35.4
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.0e-12 77.8 204 30.9
Lj4g0015450 Lotus japonicus HOM05D003173 ORTHO05D003546 1.0e-12 77.8 174 39.1
CANSAT25G0622 Cannabis sativa HOM05D003173 ORTHO05D003546 1.3e-12 77.4 182 34.1
Phvul.003G267350 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.3e-12 77.4 172 38.4
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.3e-12 76.6 194 34.0
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 3.9e-12 75.9 202 29.7
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.9e-12 75.9 184 35.9
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 5.1e-12 75.5 195 34.9
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 5.1e-12 75.5 175 35.4
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 6.6e-12 75.1 179 35.2
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 6.6e-12 75.1 194 32.5
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 6.6e-12 75.1 195 34.4
Phvul.002G104300 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 8.7e-12 74.7 177 36.7
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 1.1e-11 74.3 195 34.9
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 1.1e-11 74.3 195 34.9
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 1.5e-11 73.9 201 33.3
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.5e-11 73.9 213 32.4
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.9e-11 73.6 181 33.7
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.5e-11 73.2 202 31.7
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 2.5e-11 73.2 182 33.0
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 3.3e-11 72.8 203 33.5
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 3.3e-11 72.8 189 33.3
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 4.3e-11 72.4 188 34.0
Psat2g151840 Pisum sativum HOM05D003173 ORTHO05D003546 5.6e-11 72.0 184 35.9
Glyma.11G081300 Glycine max HOM05D003173 ORTHO05D003546 7.3e-11 71.6 187 36.4
CANSAT25G2444 Cannabis sativa HOM05D003173 ORTHO05D003546 9.6e-11 71.2 182 31.9
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 1.6e-10 70.5 200 34.0
VMungo0251G0852 Vigna mungo HOM05D003173 ORTHO05D003546 1.6e-10 70.5 159 34.6
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 2.1e-10 70.1 175 37.1
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 2.8e-10 69.7 194 33.0
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.6e-10 69.3 178 33.7
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 3.6e-10 69.3 199 32.2
Lj2g0017226 Lotus japonicus HOM05D003173 ORTHO05D003546 4.8e-10 68.9 182 34.6
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.8e-09 67.0 231 31.2
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 2.4e-09 66.6 205 34.1
Medtr5g023030 Medicago truncatula HOM05D003173 ORTHO05D003546 4.0e-09 65.9 183 30.6
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 1.2e-08 64.3 211 33.2
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.5e-08 63.9 179 31.8
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 2.6e-08 63.2 164 34.1
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 2.6e-08 63.2 197 29.4
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 5.8e-08 62.0 209 30.6
VMungo1215G2410 Vigna mungo HOM05D003173 ORTHO05D003546 7.6e-08 61.6 177 35.0
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.7e-07 60.5 175 32.0
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 2.2e-07 60.1 188 31.9
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 2.9e-07 59.7 189 30.7
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 2.9e-07 59.7 189 29.1
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 4.9e-07 58.9 208 27.4
SEGI_29248 Sequoiadendron giganteum HOM05D003173 ORTHO05D003546 8.4e-07 58.2 79 48.1
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.1e-06 57.8 181 32.0
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.1e-06 57.8 219 31.5
MBI17_g07971_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.9e-06 57.0 127 40.2
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 2.4e-06 56.6 182 30.8
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 3.2e-06 56.2 218 28.9
Gorai.003G005600 Gossypium raimondii HOM05D036397 ORTHO05D047284 5.4e-06 55.5 185 31.9
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 9.3e-06 54.7 213 29.1


User provided reference genes

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