Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007007 Carpinus fangiana HOM05D004861 ORTHO05D003151 5.8e-77 290.8 147 100.0
Haze_03744 Corylus avellana HOM05D004861 ORTHO05D001964 1.4e-14 83.6 117 45.3
ClCG10G000560 Citrullus lanatus HOM05D004861 ORTHO05D001964 1.2e-13 80.5 125 47.2
MELO3C013752.2 Cucumis melo HOM05D004861 ORTHO05D001964 1.6e-13 80.1 125 45.6
CsaV3_3G000640 Cucumis sativus L. HOM05D004861 ORTHO05D001964 1.6e-13 80.1 125 45.6
DCAR_014039 Daucus carota HOM05D004861 ORTHO05D001964 1.3e-12 77.0 159 38.4
GSVIVG01006513001 Vitis vinifera HOM05D004861 ORTHO05D001964 1.3e-12 77.0 125 43.2
Cfa007008 Carpinus fangiana HOM05D004861 ORTHO05D001964 2.3e-12 76.3 121 43.8
Gohir.A02G172700 Gossypium hirsutum HOM05D004861 ORTHO05D001964 2.3e-12 76.3 113 44.2
AUR62003332 Chenopodium quinoa HOM05D004861 ORTHO05D001964 2.9e-12 75.9 117 46.2
Lj4A223T35 Lonicera japonica HOM05D004861 ORTHO05D001964 3.8e-12 75.5 123 42.3
Ca_03631_v3 Cicer arietinum L. HOM05D004861 ORTHO05D001964 5.0e-12 75.1 125 42.4
Glyma.02G045900 Glycine max HOM05D004861 ORTHO05D001964 5.0e-12 75.1 125 42.4
RcHm_v2.0_Chr2g0098831 Rosa chinensis HOM05D004861 ORTHO05D001964 5.0e-12 75.1 118 44.9
Haze_03721 Corylus avellana HOM05D004861 ORTHO05D001964 6.6e-12 74.7 121 43.8
Glyma.16G123900 Glycine max HOM05D004861 ORTHO05D001964 6.6e-12 74.7 125 44.0
Gorai.003G007500 Gossypium raimondii HOM05D004861 ORTHO05D001964 6.6e-12 74.7 113 44.2
MD15G1241500 Malus domestica HOM05D004861 ORTHO05D001964 6.6e-12 74.7 122 45.1
DCAR_010139 Daucus carota HOM05D004861 ORTHO05D001964 8.6e-12 74.3 117 43.6
Lalb_Chr09g0334231 Lupinus albus HOM05D004861 ORTHO05D001964 8.6e-12 74.3 106 43.4
SalBow3G1445 Salvia bowleyana HOM05D004861 ORTHO05D001964 8.6e-12 74.3 125 40.0
SalBow3G4058 Salvia bowleyana HOM05D004861 ORTHO05D001964 8.6e-12 74.3 125 40.0
SGA_v2.0_scaffold2G00975 Striga asiatica HOM05D004861 ORTHO05D001964 8.6e-12 74.3 121 41.3
Gohir.D03G007200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 1.1e-11 73.9 113 44.2
Thecc.01G013900 Theobroma cacao HOM05D004861 ORTHO05D001964 1.1e-11 73.9 117 41.0
CANSAT01G1088 Cannabis sativa HOM05D004861 ORTHO05D001964 1.5e-11 73.6 121 43.0
AUR62029512 Chenopodium quinoa HOM05D004861 ORTHO05D001964 1.5e-11 73.6 117 45.3
PGR102G1053 Punica granatum HOM05D004861 ORTHO05D001964 1.5e-11 73.6 121 40.5
FvH4_1g11320 Fragaria vesca HOM05D004861 ORTHO05D001964 1.9e-11 73.2 114 43.0
HanXRQChr14g0441771 Helianthus annuus HOM05D004861 ORTHO05D001964 1.9e-11 73.2 114 43.9
QL06p051243 Quercus lobata HOM05D004861 ORTHO05D001964 1.9e-11 73.2 118 45.8
Sed0009244 Sechium edule HOM05D004861 ORTHO05D001964 1.9e-11 73.2 125 43.2
CiPaw.07G061400 Carya illinoinensis HOM05D004861 ORTHO05D001964 2.5e-11 72.8 125 40.0
HanXRQChr15g0487221 Helianthus annuus HOM05D004861 ORTHO05D001964 2.5e-11 72.8 124 42.7
Hma1.2p1_0315F.1_g122370 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 2.5e-11 72.8 118 42.4
Lsat_1_v5_gn_2_75700 Lactuca sativa HOM05D004861 ORTHO05D001964 2.5e-11 72.8 119 41.2
Sed0012496 Sechium edule HOM05D004861 ORTHO05D001964 2.5e-11 72.8 118 43.2
Duzib264G0687 Durio zibethinus HOM05D004861 ORTHO05D001964 3.3e-11 72.4 121 38.8
Prupe.7G172500 Prunus persica HOM05D004861 ORTHO05D001964 3.3e-11 72.4 121 39.7
HPP92_020724 Vanilla planifolia HOM05D004861 ORTHO05D001964 3.3e-11 72.4 111 43.2
Dinv33667 Davidia involucrata HOM05D004861 ORTHO05D001964 4.3e-11 72.0 121 38.8
Lj4g0003896 Lotus japonicus HOM05D004861 ORTHO05D001964 4.3e-11 72.0 125 41.6
MD02G1127300 Malus domestica HOM05D004861 ORTHO05D001964 5.6e-11 71.6 122 43.4
Medtr8g075190 Medicago truncatula HOM05D004861 ORTHO05D001964 5.6e-11 71.6 124 42.7
TAR628G0932 Trochodendron aralioides HOM05D004861 ORTHO05D001964 5.6e-11 71.6 121 43.0
EL10Ac6g15516 Beta vulgaris HOM05D004861 ORTHO05D001964 7.3e-11 71.2 121 43.8
ECA232G4489 Erigeron canadensis HOM05D004861 ORTHO05D001964 7.3e-11 71.2 110 43.6
ECA238G3415 Erigeron canadensis HOM05D004861 ORTHO05D001964 7.3e-11 71.2 127 41.7
TAR376G0516 Trochodendron aralioides HOM05D004861 ORTHO05D001964 7.3e-11 71.2 120 43.3
Aa31LG6G12880 Aethionema arabicum HOM05D004861 ORTHO05D001964 9.5e-11 70.9 121 39.7
Cpa.g.sc6.293 Carica papaya HOM05D004861 ORTHO05D001964 9.5e-11 70.9 117 39.3
Gohir.A11G173200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 9.5e-11 70.9 123 42.3
Gorai.007G192100 Gossypium raimondii HOM05D004861 ORTHO05D001964 9.5e-11 70.9 123 42.3
Sc03g0003720 Simmondsia chinensis HOM05D004861 ORTHO05D001964 9.5e-11 70.9 121 38.8
Eucgr.J02473 Eucalyptus grandis HOM05D004861 ORTHO05D001964 1.2e-10 70.5 119 40.3
BraA03t15465Z Brassica rapa HOM05D004861 ORTHO05D001964 1.6e-10 70.1 125 40.0
Duzib147G1106 Durio zibethinus HOM05D004861 ORTHO05D001964 1.6e-10 70.1 117 39.3
Ah.03g149180 Amaranthus hybridus HOM05D004861 ORTHO05D001964 2.1e-10 69.7 121 38.8
TWI09G1074 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 2.1e-10 69.7 120 40.8
Migut.H02183 Erythranthe guttata HOM05D004861 ORTHO05D001964 2.8e-10 69.3 120 41.7
Potri.005G110200 Populus trichocarpa HOM05D004861 ORTHO05D001964 2.8e-10 69.3 127 34.6
Sabra05G0090400 Salix brachista HOM05D004861 ORTHO05D001964 2.8e-10 69.3 127 34.6
Sp7g33710 Schrenkiella parvula HOM05D004861 ORTHO05D001964 2.8e-10 69.3 133 38.3
Aqoxy5G01828 Aquilegia oxysepala HOM05D004861 ORTHO05D001964 3.6e-10 68.9 109 39.4
CSS0021454 Camellia sinensis var. sinensis HOM05D004861 ORTHO05D001964 3.6e-10 68.9 109 41.3
Ciclev10026280m.g Citrus clementina HOM05D004861 ORTHO05D001964 3.6e-10 68.9 121 37.2
TPR.G19498 Trifolium pratense HOM05D004861 ORTHO05D001964 3.6e-10 68.9 125 40.8
TWI53G0158 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 3.6e-10 68.9 120 42.5
Dinv40122 Davidia involucrata HOM05D004861 ORTHO05D001964 4.7e-10 68.6 122 40.2
Nn5g30794 Nelumbo nucifera HOM05D004861 ORTHO05D001964 4.7e-10 68.6 120 37.5
Hund14064 Selenicereus undatus HOM05D004861 ORTHO05D001964 4.7e-10 68.6 121 39.7
Actinidia28721 Actinidia chinensis HOM05D004861 ORTHO05D001964 6.1e-10 68.2 109 40.4
CARHR244330 Cardamine hirsuta HOM05D004861 ORTHO05D001964 6.1e-10 68.2 121 38.8
Gohir.D11G180200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 6.1e-10 68.2 70 54.3
Atru.chr3.873 Acer truncatum HOM05D004861 ORTHO05D001964 8.0e-10 67.8 109 38.5
Phvul.003G265700 Phaseolus vulgaris HOM05D004861 ORTHO05D001964 8.0e-10 67.8 125 43.2
unitig_736.g22723 Utricularia gibba HOM05D004861 ORTHO05D001964 8.0e-10 67.8 120 40.0
VMungo0251G3709 Vigna mungo HOM05D004861 ORTHO05D001964 8.0e-10 67.8 125 44.0
C07p61440 Brassica napus HOM05D004861 ORTHO05D001964 1.0e-09 67.4 121 37.2
MSTRG.2733 Avicennia marina HOM05D004861 ORTHO05D001964 1.4e-09 67.0 121 38.0
COL.COLO4_22468 Corchorus olitorius HOM05D004861 ORTHO05D001964 1.4e-09 67.0 124 39.5
MBI05_g33209_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D001964 1.8e-09 66.6 121 39.7
Carub.0007s0429 Capsella rubella HOM05D004861 ORTHO05D001964 2.3e-09 66.2 124 37.9
Thhalv10025800m.g Eutrema salsugineum HOM05D004861 ORTHO05D001964 2.3e-09 66.2 104 42.3
arahy.Tifrunner.gnm1.ann1.67ZU0R Arachis hypogaea HOM05D004861 ORTHO05D001964 3.1e-09 65.9 125 41.6
arahy.Tifrunner.gnm1.ann1.HCQ68S Arachis hypogaea HOM05D004861 ORTHO05D001964 3.1e-09 65.9 125 41.6
Psat4g101760 Pisum sativum HOM05D004861 ORTHO05D001964 3.1e-09 65.9 111 39.6
HanXRQChr13g0414571 Helianthus annuus HOM05D004861 ORTHO05D001964 4.0e-09 65.5 118 39.8
vmacro18429 Vaccinium macrocarpon HOM05D004861 ORTHO05D001964 4.0e-09 65.5 124 41.9
CAN.G2331.2 Capsicum annuum HOM05D004861 ORTHO05D001964 5.2e-09 65.1 121 36.4
Cc07_g11120 Coffea canephora HOM05D004861 ORTHO05D001964 5.2e-09 65.1 121 36.4
Nitab4.5_0001685g0060 Nicotiana tabacum HOM05D004861 ORTHO05D001964 5.2e-09 65.1 121 41.3
AT4G35930 Arabidopsis thaliana HOM05D004861 ORTHO05D001964 6.8e-09 64.7 121 38.8
BcaNung05052 Brassica carinata HOM05D004861 ORTHO05D001964 6.8e-09 64.7 121 37.2
BolC7t46569H Brassica oleracea HOM05D004861 ORTHO05D001964 6.8e-09 64.7 121 37.2
Sc16g0001960 Simmondsia chinensis HOM05D004861 ORTHO05D001964 6.8e-09 64.7 121 38.0
THA.LOC104819741 Tarenaya hassleriana HOM05D004861 ORTHO05D001964 8.9e-09 64.3 127 35.4
PGSC0003DMG400003650 Solanum tuberosum HOM05D004861 ORTHO05D001964 1.2e-08 63.9 110 39.1
Zm00001eb222730 Zea mays HOM05D004861 ORTHO05D001964 1.5e-08 63.5 82 43.9
PSO170G2109 Papaver somniferum HOM05D004861 ORTHO05D001964 2.6e-08 62.8 114 36.0
SEGI_23955 Sequoiadendron giganteum HOM05D004861 ORTHO05D001964 2.6e-08 62.8 114 39.5
CAN.G354.49 Capsicum annuum HOM05D004861 ORTHO05D001964 3.4e-08 62.4 121 36.4
Os10g0438500 Oryza sativa ssp. japonica HOM05D004861 ORTHO05D001964 5.8e-08 61.6 122 34.4
AL7G15110 Arabidopsis lyrata HOM05D004861 ORTHO05D001964 7.5e-08 61.2 107 39.3
A03p63980 Brassica napus HOM05D004861 ORTHO05D001964 1.3e-07 60.5 112 38.4
CARHR252520 Cardamine hirsuta HOM05D002949 ORTHO05D003151 1.3e-07 60.5 64 42.2
Cfa012064 Carpinus fangiana HOM05D004861 ORTHO05D001964 1.3e-07 60.5 114 38.6
Solyc03g033390.3 Solanum lycopersicum HOM05D004861 ORTHO05D001964 1.3e-07 60.5 117 36.8
Sopen03g006160 Solanum pennellii HOM05D004861 ORTHO05D001964 1.3e-07 60.5 117 36.8
PGSC0003DMG400022527 Solanum tuberosum HOM05D004861 ORTHO05D001964 1.7e-07 60.1 121 38.0
CDE02G1334 Ceratophyllum demersum HOM05D004861 ORTHO05D001964 2.2e-07 59.7 97 40.2
HanXRQChr16g0517451 Helianthus annuus HOM05D002949 ORTHO05D003151 2.2e-07 59.7 104 35.6
TPR.G32423 Trifolium pratense HOM05D002949 ORTHO05D003151 3.7e-07 58.9 65 47.7
AagrBONN_evm.TU.Sc2ySwM_368.3169 Anthoceros agrestis HOM05D004861 ORTHO05D001964 6.4e-07 58.2 115 33.9
Psat7g108440 Pisum sativum HOM05D002949 ORTHO05D003151 8.3e-07 57.8 69 43.5
Zm00001eb047460 Zea mays HOM05D004861 ORTHO05D001964 1.1e-06 57.4 82 42.7
BcaC04g21365 Brassica carinata HOM05D002949 ORTHO05D003151 1.4e-06 57.0 100 34.0
A09p25790 Brassica napus HOM05D002949 ORTHO05D003151 1.4e-06 57.0 100 34.0
C09p32680 Brassica napus HOM05D002949 ORTHO05D003151 1.4e-06 57.0 100 34.0
HanXRQChr16g0502961 Helianthus annuus HOM05D002949 ORTHO05D003151 1.4e-06 57.0 89 37.1
Actinidia26996 Actinidia chinensis HOM05D002949 ORTHO05D003151 2.4e-06 56.2 59 44.1
BolC9t56113H Brassica oleracea HOM05D002949 ORTHO05D003151 2.4e-06 56.2 116 33.6
BraA09t38149Z Brassica rapa HOM05D002949 ORTHO05D003151 2.4e-06 56.2 116 33.6
Lj4g0021109 Lotus japonicus HOM05D002949 ORTHO05D003151 2.4e-06 56.2 98 36.7
Medtr4g091100 Medicago truncatula HOM05D002949 ORTHO05D003151 2.4e-06 56.2 62 48.4
THA.LOC104806276 Tarenaya hassleriana HOM05D002949 ORTHO05D003151 2.4e-06 56.2 95 36.8
arahy.Tifrunner.gnm1.ann1.E8KCWE Arachis hypogaea HOM05D002949 ORTHO05D003151 3.2e-06 55.8 58 43.1
Thhalv10029012m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 4.1e-06 55.5 65 38.5
arahy.Tifrunner.gnm1.ann1.72AI1G Arachis hypogaea HOM05D002949 ORTHO05D003151 5.4e-06 55.1 58 43.1
arahy.Tifrunner.gnm1.ann1.CAN000 Arachis hypogaea HOM05D002949 ORTHO05D003151 5.4e-06 55.1 58 43.1
Lj2A279T59 Lonicera japonica HOM05D002949 ORTHO05D003151 5.4e-06 55.1 126 33.3
Glyma.07G190100 Glycine max HOM05D002949 ORTHO05D003151 7.0e-06 54.7 90 36.7
Glyma.08G058900 Glycine max HOM05D002949 ORTHO05D003151 7.0e-06 54.7 87 35.6


User provided reference genes

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