Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 0.0e+00 1209.9 611 100.0
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 0.0e+00 1144.4 647 90.3
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.7e-269 931.8 609 77.7
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.5e-264 916.0 622 77.7
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 1.0e-228 797.0 614 68.1
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 4.1e-225 785.0 613 67.0
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 5.9e-224 781.2 613 66.4
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 7.7e-224 780.8 620 65.8
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.5e-222 775.8 647 63.8
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.2e-219 766.9 626 66.3
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 6.3e-218 761.1 620 64.7
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 5.4e-217 758.1 614 64.2
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 2.3e-215 752.7 615 66.3
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 1.5e-214 750.0 620 65.5
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 9.5e-214 747.3 617 64.5
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 6.8e-212 741.1 618 64.1
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 2.8e-210 735.7 618 63.9
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.7e-210 735.3 618 63.6
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.4e-209 733.4 629 62.2
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 9.2e-209 730.7 641 61.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.6e-208 729.9 618 62.6
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.0e-208 729.6 591 64.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 4.5e-208 728.4 611 63.0
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 7.8e-208 727.6 625 62.6
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 2.3e-207 726.1 613 62.2
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.3e-207 726.1 613 62.0
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 1.9e-206 723.0 623 63.1
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.9e-206 723.0 619 63.2
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.4e-204 716.8 636 61.5
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 1.4e-204 716.8 618 61.0
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 4.0e-204 715.3 614 62.1
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 4.0e-204 715.3 614 62.2
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.7e-202 709.9 610 62.5
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.9e-202 708.4 622 62.5
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 6.2e-197 691.4 515 70.7
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 8.3e-194 681.0 618 59.9
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 4.1e-193 678.7 619 59.8
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 3.5e-192 675.6 634 57.7
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 6.0e-192 674.9 616 57.3
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.5e-190 670.2 613 59.4
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 1.9e-190 669.8 615 58.4
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 1.9e-190 669.8 616 58.8
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 6.2e-189 664.8 619 59.5
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 2.3e-188 662.9 673 55.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 3.1e-188 662.5 620 57.9
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.5e-187 660.2 621 58.3
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 3.4e-187 659.1 569 61.9
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 6.4e-186 654.8 613 58.9
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 7.1e-185 651.4 522 63.2
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.6e-184 650.2 620 58.5
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 2.3e-183 646.4 620 58.2
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 2.3e-183 646.4 617 58.7
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 1.6e-181 640.2 614 56.5
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 2.1e-181 639.8 615 57.4
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 8.1e-181 637.9 619 57.7
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.8e-180 636.7 614 56.5
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.1e-180 636.0 610 55.2
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 6.8e-180 634.8 615 55.4
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 4.2e-177 625.5 611 55.2
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 9.2e-177 624.4 575 57.7
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.3e-175 620.5 617 54.6
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.9e-175 619.0 610 54.3
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.9e-174 616.7 604 56.1
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 1.2e-173 614.0 653 54.1
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.8e-173 612.8 615 54.8
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 6.9e-172 608.2 570 57.9
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 9.0e-172 607.8 595 55.0
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 2.9e-170 602.8 611 54.5
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 4.2e-169 599.0 629 53.7
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 2.7e-168 596.3 519 59.7
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.3e-167 594.0 594 54.7
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 8.7e-167 591.3 613 54.2
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.9e-166 590.1 644 51.4
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 1.3e-165 587.4 609 52.9
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.1e-164 584.3 542 56.5
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 2.4e-164 583.2 614 52.1
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 7.6e-163 578.2 521 58.7
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.4e-161 573.9 685 49.8
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 2.1e-160 570.1 576 53.3
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 2.1e-160 570.1 601 53.1
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 7.4e-158 561.6 636 51.4
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 4.0e-156 555.8 640 51.9
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.2e-155 554.3 631 51.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 2.6e-155 553.1 577 53.0
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 9.9e-155 551.2 576 52.6
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 1.9e-153 547.0 606 51.0
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 5.5e-153 545.4 514 55.1
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 2.7e-152 543.1 493 57.8
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 7.9e-152 541.6 626 49.8
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 5.3e-148 528.9 576 52.6
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 4.6e-144 515.8 508 55.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 7.4e-142 508.4 636 46.4
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 3.1e-140 503.1 620 47.4
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.1e-140 502.7 418 61.7
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 3.2e-137 493.0 589 48.0
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 2.8e-133 479.9 403 60.0
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.5e-129 466.8 528 49.8
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.7e-99 367.1 452 47.3
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 2.9e-90 337.0 517 38.3
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.8e-88 330.5 551 37.9
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 3.2e-84 317.0 469 40.9
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.1e-81 308.5 641 35.9
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 4.6e-75 286.6 312 57.1
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.5e-67 260.4 208 64.4
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.5e-57 228.4 192 64.6
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 4.4e-54 216.9 317 39.1
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 1.2e-38 165.6 540 27.0
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 1.2e-27 129.0 439 27.3
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 3.0e-26 124.4 123 55.3
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.1e-25 122.5 578 24.4
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 1.1e-23 115.9 374 30.2
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.9e-20 105.1 107 56.1
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.9e-20 105.1 107 56.1
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.2e-20 104.0 132 48.5
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.2e-20 104.0 132 48.5
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 1.3e-16 92.4 68 67.6
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.4e-12 79.0 138 35.5
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 4.4e-09 67.4 299 23.4
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.7e-08 65.5 203 29.1
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 9.1e-07 59.7 299 22.4
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 1.5e-06 58.9 292 22.6
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 2.6e-06 58.2 349 24.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 4.5e-06 57.4 83 43.4
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 5.9e-06 57.0 287 21.6


User provided reference genes

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