Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 6.4e-42 173.7 90 100.0
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 1.1e-41 172.9 90 98.9
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 1.1e-36 156.4 86 93.0
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 1.7e-34 149.1 83 90.4
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 3.7e-34 147.9 83 91.6
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 8.3e-34 146.7 80 92.5
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 1.4e-33 146.0 84 86.9
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 1.9e-33 145.6 80 91.2
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 2.4e-33 145.2 78 92.3
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 5.4e-33 144.1 83 88.0
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 9.2e-33 143.3 80 88.8
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 2.1e-32 142.1 83 89.2
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 2.1e-32 142.1 83 89.2
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 2.1e-32 142.1 83 86.7
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 6.0e-32 140.6 82 86.6
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.0e-31 139.8 83 86.7
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.0e-31 139.8 83 84.3
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 1.3e-31 139.4 83 84.3
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 1.3e-31 139.4 83 85.5
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 2.3e-31 138.7 80 87.5
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 2.3e-31 138.7 83 86.7
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 3.0e-31 138.3 87 78.2
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 5.1e-31 137.5 80 86.2
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 5.1e-31 137.5 80 86.2
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 6.6e-31 137.1 83 85.5
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 1.1e-30 136.3 83 81.9
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 1.1e-30 136.3 82 81.7
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 1.5e-30 136.0 83 81.9
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 3.3e-30 134.8 82 81.7
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 4.3e-30 134.4 83 78.3
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 5.6e-30 134.0 83 84.3
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 5.6e-30 134.0 79 84.8
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 5.6e-30 134.0 83 79.5
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 7.3e-30 133.7 81 82.7
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 9.5e-30 133.3 75 89.3
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 9.5e-30 133.3 75 88.0
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 9.5e-30 133.3 75 88.0
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 9.5e-30 133.3 83 78.3
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 1.6e-29 132.5 83 80.7
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 2.1e-29 132.1 83 79.5
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 2.1e-29 132.1 83 77.1
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 2.8e-29 131.7 83 81.9
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 3.6e-29 131.3 71 93.0
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 3.6e-29 131.3 83 80.7
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 8.1e-29 130.2 83 80.7
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 8.1e-29 130.2 83 80.7
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 1.1e-28 129.8 83 79.5
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 1.4e-28 129.4 82 78.0
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 1.8e-28 129.0 86 81.4
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 1.8e-28 129.0 84 79.8
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 2.3e-28 128.6 84 79.8
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 2.3e-28 128.6 84 79.8
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 2.3e-28 128.6 80 80.0
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 3.1e-28 128.3 83 78.3
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 5.2e-28 127.5 84 78.6
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 5.2e-28 127.5 84 78.6
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 6.8e-28 127.1 84 78.6
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 6.8e-28 127.1 80 80.0
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 6.8e-28 127.1 84 78.6
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 8.9e-28 126.7 84 78.6
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 1.5e-27 125.9 83 78.3
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 2.0e-27 125.6 84 78.6
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 2.0e-27 125.6 84 77.4
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 2.0e-27 125.6 83 75.9
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 3.4e-27 124.8 80 78.8
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 3.4e-27 124.8 80 78.8
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.4e-27 124.4 80 78.8
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 5.8e-27 124.0 88 75.0
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 9.9e-27 123.2 83 75.9
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 1.3e-26 122.9 71 87.3
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 4.9e-26 120.9 82 78.0
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 1.1e-25 119.8 83 71.1
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 4.1e-25 117.9 82 74.4
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 7.1e-25 117.1 83 74.7
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.6e-24 115.9 68 85.3
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.1e-24 115.5 70 82.9
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 4.6e-24 114.4 84 71.4
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 7.8e-24 113.6 80 73.8
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 3.0e-23 111.7 83 67.5
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 3.9e-23 111.3 68 80.9
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 8.6e-23 110.2 60 90.0
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.1e-22 109.8 81 71.6
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.5e-22 109.4 76 77.6
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 1.5e-22 109.4 75 78.7
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 2.5e-22 108.6 68 79.4
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 3.3e-22 108.2 83 66.3
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 5.6e-22 107.5 84 71.4
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 5.6e-22 107.5 78 70.5
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 2.1e-21 105.5 63 84.1
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 3.6e-21 104.8 78 70.5
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 6.2e-21 104.0 78 71.8
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 1.4e-20 102.8 67 74.6
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 1.8e-20 102.4 83 68.7
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 5.2e-20 100.9 67 74.6
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.2e-19 99.8 55 89.1
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 2.0e-19 99.0 60 81.7
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 1.3e-18 96.3 72 69.4
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 1.4e-17 92.8 72 66.7
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 1.2e-16 89.7 75 62.7
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 2.3e-15 85.5 60 75.0
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 1.5e-14 82.8 52 75.0
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 2.5e-14 82.0 85 55.3
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 4.0e-12 74.7 90 47.8
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 4.0e-12 74.7 51 68.6
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 2.2e-10 68.9 55 69.1
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 6.4e-10 67.4 44 81.8
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 6.4e-10 67.4 79 48.1
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 1.0e-07 60.1 37 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 3.9e-07 58.2 61 45.9


User provided reference genes

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