Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 5.2e-172 607.8 358 100.0
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.6e-120 435.6 378 75.4
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.1e-116 424.1 378 71.4
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 5.4e-100 368.6 391 63.7
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.1e-96 356.7 385 67.8
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 2.3e-95 353.2 386 60.1
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.0e-95 352.4 385 65.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.4e-94 349.0 380 62.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.7e-94 348.6 380 60.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 9.8e-94 347.8 381 63.3
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.9e-91 338.6 385 62.1
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 7.8e-91 338.2 375 60.0
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.9e-89 333.6 374 64.4
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.6e-88 330.5 381 57.7
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 2.8e-88 329.7 375 63.2
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 3.0e-87 326.2 374 61.8
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 8.9e-87 324.7 381 63.3
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 8.9e-87 324.7 386 61.9
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.0e-86 323.6 373 61.7
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 5.8e-86 322.0 375 57.6
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 7.5e-86 321.6 381 61.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 7.5e-86 321.6 181 96.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.3e-85 320.9 383 59.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.2e-85 320.1 382 61.0
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 6.4e-85 318.5 375 55.5
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 6.4e-85 318.5 376 58.0
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 8.3e-85 318.2 370 55.7
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 5.4e-84 315.5 397 60.2
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 9.2e-84 314.7 381 60.1
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.5e-83 312.8 379 62.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.6e-83 312.4 388 59.5
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.3e-82 310.1 379 59.4
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.0e-82 309.7 379 60.7
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.1e-81 307.8 385 56.6
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.3e-79 300.1 391 56.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.1e-79 299.7 383 58.7
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 5.2e-79 298.9 390 55.6
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.5e-78 297.4 391 56.8
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.6e-78 296.6 407 54.5
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 2.6e-78 296.6 392 57.7
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.3e-77 294.3 383 60.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 3.7e-77 292.7 343 59.2
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.1e-76 291.2 376 55.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.2e-76 289.7 364 56.3
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 5.4e-76 288.9 373 57.6
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 7.0e-76 288.5 372 56.7
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.2e-76 288.1 373 53.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.7e-75 286.6 380 56.8
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 4.6e-75 285.8 370 59.2
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 6.0e-75 285.4 376 52.9
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.8e-75 285.0 375 57.3
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.7e-74 283.9 374 52.9
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.3e-74 283.5 380 54.5
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 8.6e-74 281.6 385 51.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.9e-73 280.4 358 59.2
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.5e-73 280.0 386 54.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.3e-73 279.6 383 53.8
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.2e-72 277.7 392 53.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.6e-72 277.3 377 52.0
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.1e-71 273.1 456 48.9
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 5.2e-71 272.3 379 55.4
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.5e-70 270.8 361 59.6
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.5e-70 270.8 373 52.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.7e-69 267.3 375 57.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.2e-69 266.9 379 55.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.9e-69 266.5 374 52.4
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.4e-68 264.2 393 50.9
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.9e-68 263.8 370 47.8
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.9e-68 263.8 371 50.4
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.2e-68 263.1 382 51.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 7.1e-68 261.9 391 50.1
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.6e-67 260.8 382 56.5
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 2.1e-67 260.4 372 57.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.6e-67 259.2 347 58.8
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.9e-66 256.1 373 51.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.3e-65 252.7 379 49.1
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 9.5e-65 251.5 374 51.1
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.2e-64 251.1 351 51.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.2e-64 251.1 366 56.6
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.6e-64 250.8 366 52.7
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-64 250.4 374 57.2
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-63 248.1 374 56.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.8e-63 247.3 357 53.2
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.8e-63 247.3 371 56.1
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.4e-63 246.9 376 49.7
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.8e-63 245.4 372 53.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 8.9e-63 245.0 340 57.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 5.8e-62 242.3 371 54.4
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 9.9e-62 241.5 376 49.5
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.7e-61 240.7 350 44.6
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.2e-61 240.4 336 53.6
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.9e-61 239.2 385 54.0
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 8.4e-61 238.4 335 57.3
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.1e-60 238.0 394 52.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.9e-60 237.3 347 50.1
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.1e-60 235.3 294 56.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 9.2e-60 235.0 330 56.1
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.3e-58 231.1 371 55.3
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.3e-58 231.1 258 58.1
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 6.6e-58 228.8 360 47.8
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.5e-57 227.6 358 47.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.1e-55 221.5 373 44.5
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.1e-55 221.5 357 43.1
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.4e-55 221.1 374 46.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.8e-55 220.7 352 52.3
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.1e-55 219.9 378 52.1
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.0e-55 219.5 378 52.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.4e-54 216.1 450 42.0
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 9.9e-54 214.9 376 53.7
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.2e-53 213.8 365 47.1
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.2e-53 213.8 366 51.4
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 6.4e-53 212.2 380 43.9
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-52 211.5 458 41.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.4e-52 211.1 375 51.7
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-52 211.1 317 51.1
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.4e-52 210.3 378 48.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.1e-52 208.8 317 50.5
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.6e-51 207.6 352 51.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.6e-51 206.1 334 48.2
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 4.6e-51 206.1 365 45.2
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 7.8e-51 205.3 386 42.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.9e-50 203.0 378 41.5
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.5e-49 200.3 358 46.6
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 5.6e-49 199.1 356 44.4
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 3.1e-47 193.4 353 49.6
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.9e-47 192.2 336 44.6
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.8e-46 189.1 366 40.4
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 7.1e-44 182.2 359 39.8
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.0e-42 178.3 362 38.7
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.3e-42 177.9 336 40.5
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 2.3e-42 177.2 392 42.1
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 1.9e-41 174.1 327 42.8
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.5e-41 173.7 383 42.3
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 2.8e-40 170.2 325 39.1
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.7e-37 161.0 220 52.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.7e-37 161.0 389 40.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.2e-37 160.6 341 37.2
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.9e-36 157.5 357 37.8
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.6e-35 154.5 386 41.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.5e-33 147.9 338 38.8
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 9.6e-33 145.2 331 38.1
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 9.6e-33 145.2 362 39.0
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.7e-32 143.3 392 36.7
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 6.2e-32 142.5 133 71.4
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 4.0e-31 139.8 315 36.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 9.0e-31 138.7 207 47.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.6e-30 137.1 229 46.7
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 4.5e-30 136.3 263 48.3
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.0e-29 135.2 256 44.1
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.3e-29 134.8 283 39.9
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-29 133.7 320 37.5
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.9e-29 133.7 320 37.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.8e-29 133.3 330 41.2
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 8.4e-29 132.1 366 37.7
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 9.3e-28 128.6 282 38.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 1.2e-27 128.3 254 41.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.2e-27 128.3 282 39.4
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.6e-27 127.9 247 43.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.6e-27 126.3 222 43.7
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 7.9e-27 125.6 214 50.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 7.9e-27 125.6 214 50.0
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.3e-26 124.0 211 47.4
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.9e-25 120.9 214 47.2
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.7e-25 119.4 318 36.8
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.2e-24 115.5 333 42.9
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.2e-24 115.5 333 42.9
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 6.9e-23 112.5 134 56.7
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.5e-22 109.8 196 48.5
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.2e-19 101.7 333 39.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.7e-16 91.3 288 30.6
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 6.9e-15 85.9 225 33.3
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 4.2e-12 76.6 297 31.0
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-11 75.1 58 74.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-11 73.9 58 72.4
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.8e-08 63.9 122 44.3
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.2e-08 62.4 115 47.8
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 8.2e-08 62.4 78 46.2
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.9e-06 56.2 47 66.0


User provided reference genes

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