Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.3e-77 293.5 213 100.0
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.9e-60 236.5 207 65.2
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 8.8e-58 227.6 207 64.3
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 3.3e-57 225.7 138 85.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 9.7e-57 224.2 211 73.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.0e-54 216.5 209 64.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 7.7e-54 214.5 212 59.9
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.3e-53 213.8 211 58.3
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.7e-53 213.4 146 76.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.2e-53 213.0 210 58.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.9e-53 212.6 213 57.7
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 5.0e-53 211.8 148 77.7
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.1e-52 210.7 146 76.7
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-52 210.7 207 59.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.9e-52 209.9 207 59.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.2e-52 208.8 211 56.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 5.5e-52 208.4 213 57.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.2e-51 207.2 213 60.6
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.6e-51 206.8 198 60.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.1e-51 206.5 212 56.1
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.7e-51 206.1 144 73.6
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.1e-51 204.9 207 58.5
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.0e-50 204.1 207 57.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.0e-50 204.1 201 60.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.0e-50 204.1 194 60.3
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.4e-50 203.8 209 59.3
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.4e-50 203.8 208 57.2
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.4e-50 203.8 207 57.5
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.8e-50 203.4 146 74.7
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.2e-50 201.8 212 54.2
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 6.7e-50 201.4 207 57.0
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-49 200.7 204 57.4
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.1e-49 200.7 188 60.6
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.0e-49 199.9 194 59.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.6e-49 199.5 209 56.0
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.6e-49 199.5 212 53.8
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 3.3e-49 199.1 185 61.1
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.3e-49 199.1 136 76.5
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.4e-49 198.7 136 76.5
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 7.5e-49 198.0 141 72.3
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.5e-49 198.0 211 64.9
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.3e-48 197.2 200 57.5
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.3e-48 197.2 146 71.9
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.8e-48 196.1 142 73.2
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 2.8e-48 196.1 192 59.4
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 8.2e-48 194.5 142 73.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 8.2e-48 194.5 146 70.5
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.1e-47 194.1 139 74.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.1e-47 194.1 194 56.7
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.8e-47 193.4 139 72.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.8e-47 193.4 192 58.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 4.1e-47 192.2 142 73.2
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.1e-47 192.2 146 70.5
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 4.1e-47 192.2 139 70.5
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 5.3e-47 191.8 139 71.9
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.3e-47 191.8 124 78.2
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 5.3e-47 191.8 122 81.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.2e-46 190.7 196 58.2
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.6e-46 190.3 124 77.4
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.6e-46 190.3 196 57.7
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-46 190.3 122 77.0
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-46 190.3 122 77.0
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.0e-46 189.9 139 74.1
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.7e-46 189.5 122 75.4
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.5e-46 188.7 142 69.0
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 4.5e-46 188.7 184 59.2
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.2e-45 186.4 136 71.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.2e-45 186.4 128 77.3
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 3.8e-45 185.7 117 76.9
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 6.5e-45 184.9 117 77.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 6.5e-45 184.9 213 54.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 8.5e-45 184.5 117 76.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 8.5e-45 184.5 120 75.0
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.9e-44 183.3 117 76.9
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.9e-44 183.3 117 76.9
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.5e-44 183.0 117 76.1
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 2.5e-44 183.0 117 76.1
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.2e-44 181.4 142 69.7
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 9.4e-44 181.0 116 79.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.2e-43 180.6 197 52.8
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-43 180.6 117 75.2
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.1e-43 179.9 116 78.4
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 6.1e-43 178.3 117 74.4
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 6.1e-43 178.3 117 74.4
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 6.1e-43 178.3 117 74.4
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 6.1e-43 178.3 142 67.6
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.4e-42 177.2 126 72.2
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.8e-42 176.8 189 53.4
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.2e-42 175.3 121 70.2
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.8e-42 174.5 121 70.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.5e-41 173.7 206 55.3
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-41 173.3 117 71.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-41 173.3 117 71.8
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-41 173.3 117 71.8
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 2.0e-41 173.3 117 71.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.0e-41 173.3 117 71.8
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 9.8e-41 171.0 117 70.9
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 9.8e-41 171.0 112 75.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.3e-40 170.6 114 75.4
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.7e-40 170.2 137 65.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.2e-40 169.9 125 69.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 4.8e-40 168.7 117 70.1
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.1e-39 167.5 143 65.7
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.4e-39 167.2 127 68.5
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.8e-39 166.8 115 73.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.1e-39 166.0 109 73.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 3.1e-39 166.0 119 68.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.7e-38 162.9 145 60.7
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.7e-37 160.2 123 63.4
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-36 157.1 126 66.7
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.5e-36 156.4 131 66.4
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.0e-34 149.4 123 62.6
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.1e-31 139.4 113 68.1
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.6e-30 137.1 214 44.9
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.6e-30 137.1 113 67.3
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 2.7e-30 136.3 156 85.3
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.8e-29 132.5 113 65.5
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.4e-23 114.0 97 62.9
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 9.2e-23 111.3 135 51.1
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-20 104.4 65 76.9
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.8e-19 99.8 127 42.5
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 4.7e-19 99.0 65 76.9
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 5.2e-18 95.5 66 75.8
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 6.8e-18 95.1 120 41.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 3.4e-17 92.8 142 37.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.1e-15 87.8 117 36.8
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.4e-15 87.4 121 43.8
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.0e-10 69.3 54 66.7
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.2e-09 67.8 121 41.3
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.8e-09 65.5 47 70.2
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.7e-08 63.9 63 46.0
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.7e-08 62.8 47 68.1
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 3.2e-07 59.7 63 57.1


User provided reference genes

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