Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.0e-75 284.6 139 100.0
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 3.4e-58 228.4 139 80.6
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.6e-53 211.1 138 74.6
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 8.9e-51 203.8 163 68.1
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.3e-45 184.1 146 62.3
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.8e-44 182.2 144 65.3
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.4e-43 179.9 139 64.7
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.5e-42 176.4 140 65.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.7e-41 172.9 140 62.9
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.9e-41 172.2 138 61.6
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 3.7e-41 171.8 140 63.6
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 4.9e-41 171.4 137 62.8
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.4e-40 169.9 146 58.9
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 7.8e-39 164.1 137 60.6
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.0e-38 163.7 140 58.6
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.3e-38 162.5 138 59.4
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.3e-38 162.5 137 58.4
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 5.0e-38 161.4 138 57.2
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 6.6e-38 161.0 138 58.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 8.6e-38 160.6 138 56.5
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 8.6e-38 160.6 136 60.3
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.1e-37 160.2 138 56.5
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 3.3e-37 158.7 139 58.3
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 5.6e-37 157.9 130 56.9
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 9.5e-37 157.1 137 60.6
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.7e-36 154.8 138 56.5
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 4.7e-36 154.8 142 57.0
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 8.1e-36 154.1 146 55.5
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.8e-35 152.9 138 56.5
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.8e-35 152.9 153 51.0
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 3.1e-35 152.1 140 55.7
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 4.0e-35 151.8 140 55.7
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.0e-35 151.8 144 53.5
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 6.8e-35 151.0 143 53.8
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 8.9e-35 150.6 139 53.2
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.2e-34 150.2 139 54.7
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.4e-34 148.7 139 54.0
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 3.4e-34 148.7 138 51.4
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.4e-34 148.3 143 53.1
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 5.8e-34 147.9 139 54.7
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 7.5e-34 147.5 143 55.2
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 7.5e-34 147.5 141 53.2
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 7.5e-34 147.5 138 54.3
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 9.8e-34 147.1 138 52.9
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 9.8e-34 147.1 139 54.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.7e-33 146.4 146 53.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 3.7e-33 145.2 139 52.5
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.7e-33 145.2 139 54.0
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 4.9e-33 144.8 146 51.4
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 4.9e-33 144.8 138 53.6
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 8.3e-33 144.1 138 52.2
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.1e-32 143.7 150 51.3
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.4e-32 143.3 146 50.7
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.4e-32 143.3 138 54.3
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.9e-32 142.9 141 51.8
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.4e-32 142.5 138 51.4
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 3.2e-32 142.1 138 51.4
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 3.2e-32 142.1 137 53.3
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.1e-32 141.7 150 50.0
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.1e-32 141.7 150 50.0
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.1e-32 141.7 139 54.7
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.1e-32 141.7 139 54.7
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 7.1e-32 141.0 139 53.2
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 9.2e-32 140.6 150 49.3
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 9.2e-32 140.6 150 49.3
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 9.2e-32 140.6 150 49.3
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 9.2e-32 140.6 147 51.0
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 9.2e-32 140.6 139 53.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.6e-31 139.8 139 54.0
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 3.5e-31 138.7 130 55.4
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 4.6e-31 138.3 139 52.5
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 6.0e-31 137.9 138 47.8
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 6.0e-31 137.9 161 47.2
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 7.8e-31 137.5 144 51.4
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.0e-30 137.1 146 48.6
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.3e-30 136.0 131 54.2
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 3.9e-30 135.2 150 47.3
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.9e-30 135.2 139 48.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 5.1e-30 134.8 129 51.2
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.1e-30 134.8 130 52.3
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 5.1e-30 134.8 139 48.9
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.1e-29 133.7 138 51.4
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.5e-29 132.5 118 55.1
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 3.3e-29 132.1 140 49.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 7.3e-29 131.0 138 50.0
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 9.5e-29 130.6 129 51.9
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.2e-28 130.2 139 49.6
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.6e-28 129.8 163 41.7
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.1e-28 129.4 138 45.7
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 2.1e-28 129.4 140 50.0
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.8e-28 129.0 138 51.4
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.2e-28 127.9 136 50.7
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 8.1e-28 127.5 141 46.1
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.8e-27 126.3 163 41.1
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.3e-27 125.9 140 49.3
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.3e-27 125.9 149 45.0
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.0e-27 125.2 141 48.2
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 4.0e-27 125.2 139 45.3
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 5.2e-27 124.8 129 50.4
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.0e-26 122.9 143 49.0
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.8e-26 121.3 157 43.9
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 5.8e-26 121.3 138 44.2
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 7.6e-26 120.9 140 44.3
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 7.6e-26 120.9 130 48.5
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.2e-25 119.4 138 47.1
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 8.4e-25 117.5 161 41.6
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.1e-24 117.1 129 47.3
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 9.2e-24 114.0 139 42.4
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-23 113.6 138 43.5
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.2e-23 113.6 140 46.4
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.6e-23 113.2 140 46.4
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 2.1e-23 112.8 132 41.7
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.5e-23 112.1 138 43.5
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 1.0e-22 110.5 141 45.4
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.5e-21 106.7 141 41.8
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.6e-21 104.8 108 54.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 7.3e-21 104.4 129 41.1
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.1e-20 102.8 241 33.2
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 3.6e-20 102.1 138 43.5
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.1e-19 99.0 98 51.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.2e-18 97.1 145 42.8
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 9.9e-18 94.0 133 42.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 9.9e-18 94.0 97 50.5
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.7e-17 93.2 138 38.4
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 2.2e-17 92.8 64 64.1
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.9e-17 92.4 133 41.4
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.8e-17 92.0 133 41.4
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 8.4e-17 90.9 98 44.9
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.4e-16 90.1 128 39.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 2.1e-15 86.3 73 56.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.7e-15 85.9 102 43.1
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 3.5e-15 85.5 166 33.1
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.7e-14 83.2 136 34.6
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.3e-14 82.8 136 37.5
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 8.7e-14 80.9 118 40.7
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.1e-13 80.5 74 55.4
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.3e-13 79.0 94 46.8
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.3e-13 79.0 154 34.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 4.3e-13 78.6 86 46.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 3.6e-12 75.5 107 38.3
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.6e-12 75.5 156 30.8
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.8e-12 75.1 62 58.1
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.2e-10 70.5 53 56.6
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-10 70.5 73 46.6
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.6e-10 69.3 144 31.9
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.2e-09 66.2 109 36.7
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.2e-09 66.2 189 28.0
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 3.8e-09 65.5 42 71.4
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 7.1e-08 61.2 51 51.0
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 3.9e-06 55.5 57 49.1
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.7e-06 54.3 94 39.4


User provided reference genes

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