Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1419.8 697 100.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1359.4 676 97.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1295.8 696 89.7
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1259.6 698 88.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1257.7 698 86.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1241.1 698 86.0
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 698 85.2
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1238.0 698 84.7
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1236.5 698 85.0
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1235.3 698 85.8
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1234.9 692 85.4
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1231.5 698 84.7
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1230.3 694 85.0
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1229.5 697 84.2
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 697 84.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 698 85.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1227.6 692 85.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1223.0 698 84.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1222.2 694 84.0
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 697 83.9
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1221.5 694 84.6
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1221.5 697 84.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1219.9 694 84.6
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1218.8 698 84.5
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1218.8 697 83.5
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1216.8 700 84.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1215.7 697 83.6
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1215.7 697 83.5
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1215.3 698 83.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 694 84.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 698 83.5
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 694 83.7
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1211.8 695 83.9
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1211.1 693 84.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1210.7 695 82.6
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 699 83.1
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 697 83.4
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 695 83.3
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 720 82.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1205.3 697 82.9
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 693 83.0
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 695 82.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 698 82.2
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 698 82.2
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 697 82.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1198.0 695 83.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1197.6 697 82.8
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 697 82.5
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 695 82.7
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 695 82.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 694 82.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 698 83.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 694 82.4
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 693 83.0
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 695 82.4
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 695 82.3
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 695 81.2
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 693 82.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 695 82.2
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 693 81.1
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 695 81.6
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 692 82.4
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 695 81.9
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 694 82.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 700 80.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 695 80.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 694 79.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 697 80.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 695 80.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 695 80.3
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 694 79.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 78.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 698 81.7
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 694 79.1
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 694 79.1
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 696 78.6
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 694 78.0
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 696 78.4
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 694 77.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 680 81.3
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 680 81.0
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 698 78.9
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 696 79.5
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 747 75.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 693 76.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 718 77.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 718 76.6
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1123.6 692 78.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 615 87.5
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 647 82.1
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1112.4 698 76.8
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 740 74.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1104.4 719 73.9
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1102.4 699 76.7
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1099.7 695 78.8
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1085.5 699 77.0
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.4e-311 1071.6 698 75.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 9.5e-311 1069.7 678 75.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.6e-300 1035.0 705 72.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.1e-297 1025.4 585 83.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.3e-296 1022.7 702 70.9
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 8.1e-294 1013.4 695 71.2
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.6e-286 988.0 539 88.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 8.7e-280 966.8 641 74.3
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 4.6e-273 944.5 712 69.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.5e-260 902.9 581 75.0
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.6e-246 856.3 538 78.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.6e-246 856.3 699 60.4
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.3e-231 805.4 471 83.4
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-224 783.1 703 57.5
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.4e-223 778.5 701 56.6
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.4e-223 778.5 701 56.6
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 5.3e-221 771.5 699 54.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.2e-218 762.3 704 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 2.7e-217 759.2 710 55.6
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.5e-196 689.1 386 85.2
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.9e-162 577.0 721 45.2
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 4.0e-152 542.7 375 72.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 9.0e-144 515.0 505 56.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 7.7e-111 405.6 763 35.4
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.0e-110 405.2 248 78.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.8e-102 376.7 812 32.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 3.6e-100 370.2 344 58.7
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.4e-98 363.6 278 64.7
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.3e-78 298.5 247 63.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.9e-78 297.0 242 64.5
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 6.2e-76 289.7 179 77.1
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-74 285.4 184 76.6
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.4e-67 261.9 165 75.2
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.2e-63 248.8 235 56.2
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.3e-62 245.4 617 31.8
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.5e-45 188.7 127 68.5
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.6e-44 184.1 144 68.8
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 8.1e-44 183.0 138 71.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.6e-37 160.2 232 43.5
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 6.2e-36 156.8 93 80.6
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-32 145.6 75 90.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.9e-32 145.2 76 89.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.5e-26 124.0 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.5e-21 108.2 86 60.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 5.0e-17 94.0 87 55.2
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.4e-11 75.9 48 75.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.2e-10 72.8 48 68.8
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 6.1e-07 60.5 33 81.8


User provided reference genes

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