Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.2e-129 466.5 237 100.0
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 2.9e-41 172.9 96 97.9
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 6.8e-35 151.8 96 85.4
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 9.8e-34 147.9 95 86.3
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 9.8e-34 147.9 95 86.3
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 2.2e-33 146.7 96 84.4
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 1.1e-32 144.4 96 82.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.4e-32 143.3 96 83.3
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 3.2e-32 142.9 96 81.2
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.1e-31 140.2 96 80.2
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 2.1e-31 140.2 96 79.2
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.1e-31 140.2 147 58.5
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.5e-31 139.4 96 78.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.5e-31 139.4 96 78.1
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 6.0e-31 138.7 96 81.2
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 7.8e-31 138.3 96 79.2
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.0e-30 137.9 95 78.9
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 1.7e-30 137.1 128 62.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.7e-30 137.1 95 77.9
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.7e-30 137.1 90 82.2
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 3.0e-30 136.3 207 46.4
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 3.0e-30 136.3 93 78.5
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 3.0e-30 136.3 151 55.6
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.9e-30 136.0 90 81.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.9e-30 136.0 96 79.2
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 5.1e-30 135.6 95 78.9
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 6.6e-30 135.2 96 80.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 77.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 78.1
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 79.2
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 79.2
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 77.1
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 8.6e-30 134.8 96 77.1
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 8.6e-30 134.8 166 51.2
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.1e-29 134.4 104 73.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.1e-29 134.4 96 79.2
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.1e-29 134.4 96 79.2
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.1e-29 134.4 96 79.2
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.5e-29 134.0 93 77.4
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 1.5e-29 134.0 208 44.7
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 3.3e-29 132.9 93 76.3
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 4.3e-29 132.5 96 77.1
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 4.3e-29 132.5 88 80.7
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.3e-29 132.5 96 78.1
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 4.3e-29 132.5 96 75.0
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 4.3e-29 132.5 96 76.0
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 7.3e-29 131.7 96 75.0
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 9.5e-29 131.3 96 74.0
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 9.5e-29 131.3 96 77.1
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 2.1e-28 130.2 96 74.0
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 4.7e-28 129.0 96 76.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.1e-27 127.9 96 74.0
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.1e-27 127.9 93 73.1
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.4e-27 127.5 93 73.1
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.8e-27 127.1 170 50.0
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.8e-27 127.1 94 74.5
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.8e-27 127.1 96 76.0
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-27 127.1 96 76.0
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.3e-27 126.7 173 50.9
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 2.3e-27 126.7 93 71.0
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.3e-27 126.7 150 54.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 3.1e-27 126.3 96 72.9
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 4.0e-27 125.9 93 76.3
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 4.0e-27 125.9 93 76.3
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 6.8e-27 125.2 93 75.3
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 6.8e-27 125.2 93 75.3
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 6.8e-27 125.2 97 73.2
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.2e-26 124.4 96 71.9
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 3.4e-26 122.9 94 69.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 3.4e-26 122.9 94 73.4
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.4e-26 122.9 97 69.1
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 4.4e-26 122.5 90 75.6
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 7.6e-26 121.7 93 73.1
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 7.6e-26 121.7 93 74.2
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 7.6e-26 121.7 125 56.8
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 7.6e-26 121.7 96 71.9
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.3e-25 120.9 90 74.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 2.2e-25 120.2 93 73.1
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.9e-25 119.8 98 70.4
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 3.7e-25 119.4 93 73.1
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 4.9e-25 119.0 96 70.8
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 6.4e-25 118.6 93 72.0
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 6.4e-25 118.6 93 72.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 6.4e-25 118.6 93 72.0
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 6.4e-25 118.6 93 72.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 6.4e-25 118.6 94 67.0
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.9e-24 117.1 90 72.2
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 2.4e-24 116.7 90 70.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.2e-24 116.3 93 71.0
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 5.4e-24 115.5 93 65.6
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 9.2e-24 114.8 95 64.2
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.7e-23 113.2 227 39.6
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.0e-22 111.3 93 68.8
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.0e-22 111.3 93 68.8
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.0e-22 111.3 93 68.8
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.3e-22 110.9 96 69.8
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.3e-22 110.2 91 62.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-22 109.4 93 66.7
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 5.1e-22 109.0 204 41.2
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 6.6e-22 108.6 96 68.8
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 4.3e-21 105.9 87 69.0
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.2e-20 104.4 96 62.5
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.6e-20 104.0 157 45.9
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.6e-20 104.0 156 46.2
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.6e-20 104.0 181 44.2
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 6.2e-20 102.1 95 62.1
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 8.1e-20 101.7 254 35.8
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-19 100.5 83 73.5
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 3.1e-19 99.8 95 60.0
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 5.2e-19 99.0 96 58.3
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 5.2e-19 99.0 96 59.4
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.9e-17 93.2 96 55.2
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 4.6e-15 85.9 98 55.1
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.7e-14 84.0 64 79.7
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 4.8e-12 75.9 52 82.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 8.1e-12 75.1 75 53.3
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 8.1e-12 75.1 75 53.3
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 1.1e-11 74.7 75 56.0
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 5.3e-11 72.4 96 51.0
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 6.9e-11 72.0 41 80.5
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 9.0e-11 71.6 143 39.2
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.6e-10 70.1 41 80.5
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.7e-09 67.4 41 78.0
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 1.7e-09 67.4 41 78.0
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.4e-08 64.3 40 75.0
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 1.9e-08 63.9 62 54.8
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.2e-08 63.2 41 73.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 7.1e-08 62.0 96 38.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 9.3e-08 61.6 151 33.8
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 6.0e-07 58.9 41 65.9
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 5.1e-06 55.8 87 42.5


User provided reference genes

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