Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-98 362.8 181 100.0
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.9e-92 340.5 181 93.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.5e-71 273.1 167 79.6
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.6e-71 272.3 167 79.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-70 270.0 170 76.5
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-70 270.0 170 76.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-69 265.8 171 76.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.2e-69 265.0 173 75.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.2e-69 264.2 169 74.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.6e-68 261.9 170 74.1
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.0e-67 260.4 169 75.1
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-67 260.4 170 76.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.0e-67 258.8 170 74.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.8e-67 257.3 167 71.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-66 256.9 165 75.2
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-66 256.9 174 72.4
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-66 256.5 165 73.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-66 256.5 170 74.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.0e-66 256.1 162 75.3
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.3e-66 255.4 172 74.4
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.4e-66 254.2 172 74.4
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-65 253.4 165 72.7
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.8e-65 252.3 170 72.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.2e-65 250.8 162 74.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.1e-64 250.4 167 73.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-64 249.6 179 69.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.8e-64 249.6 170 73.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.1e-64 248.8 160 74.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.3e-64 248.1 164 71.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.0e-64 247.7 169 71.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 7.0e-64 247.7 167 71.9
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-63 246.5 160 73.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.6e-63 246.5 160 73.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-63 246.5 164 71.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.0e-63 246.1 165 71.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.0e-63 246.1 165 72.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.6e-63 245.7 167 73.1
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.6e-63 245.7 164 72.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 3.5e-63 245.4 164 72.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.9e-63 244.6 160 71.9
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.9e-63 244.6 164 71.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.7e-63 244.2 165 70.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 7.7e-63 244.2 165 70.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 7.7e-63 244.2 165 71.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.0e-62 243.8 164 71.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.0e-62 243.8 164 71.3
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.3e-62 243.4 172 68.6
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.3e-62 243.4 167 70.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.2e-62 242.7 164 69.5
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.2e-62 242.7 165 68.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.9e-62 242.3 160 70.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.9e-62 242.3 162 74.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.9e-62 242.3 160 73.1
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.9e-62 242.3 160 71.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-62 242.3 160 71.2
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-62 242.3 164 70.7
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.9e-62 242.3 165 71.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.9e-62 242.3 160 73.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.8e-62 241.9 164 70.7
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.8e-62 241.9 169 71.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.8e-62 241.9 166 70.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.0e-62 241.5 170 69.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.0e-62 241.5 170 69.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.0e-62 241.5 165 70.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.5e-62 241.1 160 71.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.5e-62 240.7 165 70.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.5e-62 240.7 165 70.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.1e-61 240.4 165 70.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.1e-61 240.4 165 69.7
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.5e-61 240.0 169 71.6
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-61 240.0 169 71.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.5e-61 240.0 169 68.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-61 240.0 165 69.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-61 239.2 165 69.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.2e-61 238.8 165 69.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.2e-61 238.8 160 71.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.2e-61 238.4 165 68.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.5e-61 238.0 153 75.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 9.4e-61 237.3 165 68.5
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.2e-60 236.9 160 70.0
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.2e-60 236.9 160 70.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.2e-60 236.9 166 69.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.2e-60 236.9 160 70.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.6e-60 236.5 160 70.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.6e-60 236.5 160 70.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.1e-60 236.1 168 66.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-60 236.1 169 69.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.6e-60 235.3 160 69.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.6e-60 235.3 160 69.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.6e-60 235.3 165 67.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.6e-60 235.3 160 70.6
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.7e-60 235.0 165 67.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.7e-60 235.0 164 68.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.1e-60 234.6 164 67.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.0e-60 234.2 168 67.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.0e-59 233.8 160 69.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.0e-59 233.8 162 71.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.0e-59 233.8 165 66.7
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.0e-59 233.8 160 68.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-59 233.4 168 66.7
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-59 233.4 168 67.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-59 233.4 173 65.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.4e-59 233.4 164 69.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.8e-59 233.0 160 68.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.3e-59 232.6 164 67.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.3e-59 232.6 183 66.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.0e-59 231.9 160 70.6
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 6.7e-59 231.1 164 66.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.7e-59 231.1 166 65.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.7e-59 231.1 168 64.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 8.8e-59 230.7 164 66.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.3e-58 228.8 167 67.7
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.7e-58 228.0 159 70.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 5.7e-58 228.0 167 65.3
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 9.7e-58 227.3 175 61.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.3e-57 226.9 167 65.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.7e-57 226.5 168 65.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.2e-57 226.1 167 65.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 3.7e-57 225.3 168 65.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.7e-57 225.3 168 65.5
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 8.3e-57 224.2 167 68.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.4e-56 222.6 169 63.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.1e-56 222.2 168 63.1
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 4.1e-56 221.9 164 65.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.1e-56 221.9 167 64.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.1e-56 220.7 165 66.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 9.1e-56 220.7 163 65.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.7e-55 219.2 168 64.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.5e-55 218.8 166 63.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.5e-55 218.4 170 65.3
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.9e-55 218.0 160 68.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.9e-55 218.0 160 61.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.8e-54 215.3 164 67.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 8.5e-54 214.2 163 61.3
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.5e-53 213.4 163 63.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.5e-53 211.5 179 60.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.6e-52 209.9 163 61.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.7e-52 209.1 158 60.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.7e-52 209.1 160 58.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.8e-51 206.5 132 72.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 3.0e-51 205.7 165 61.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.8e-48 196.4 167 54.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.1e-48 195.3 156 57.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.4e-48 194.9 132 67.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.5e-47 192.2 163 57.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-46 190.3 166 58.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.7e-46 189.9 164 59.1
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-46 189.5 131 68.7
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.0e-46 188.3 128 75.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.2e-44 183.7 135 69.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.7e-44 181.8 129 69.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.0e-44 181.0 175 49.7
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.9e-43 177.6 157 52.2
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.7e-42 174.9 123 70.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.1e-40 169.1 127 63.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 7.0e-40 167.9 131 61.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.0e-39 166.4 165 53.9
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-38 163.3 168 53.0
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-38 162.5 168 52.4
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.9e-38 162.5 161 55.9
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.6e-38 161.0 171 50.9
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.8e-35 153.3 158 51.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.9e-35 151.0 104 73.1
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.2e-32 142.5 116 62.9
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.7e-31 139.4 89 73.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.6e-31 138.7 93 71.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.5e-29 133.7 95 65.3
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-28 129.0 143 44.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.2e-25 119.8 92 55.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.0e-22 110.9 73 68.5
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 3.9e-22 109.0 168 42.3
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.4e-16 88.6 84 51.2
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-12 76.3 72 51.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.8e-11 71.6 121 38.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.9e-11 71.2 47 74.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 7.6e-10 68.2 181 29.3
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-09 66.6 45 68.9
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.4e-09 64.7 182 28.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 4.6e-07 58.9 178 26.4
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 4.6e-07 58.9 34 76.5
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-06 57.8 34 73.5
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 8.7e-06 54.7 32 71.9


User provided reference genes

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