Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 0.0e+00 1288.9 653 100.0
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 0.0e+00 1236.9 653 96.0
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.2e-299 1032.7 658 79.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.5e-297 1025.8 654 79.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 7.1e-276 953.7 665 73.8
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-266 923.3 654 72.5
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.1e-265 919.8 652 73.2
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.1e-263 913.3 652 71.5
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.1e-263 911.8 654 72.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 2.0e-262 909.1 655 71.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.0e-261 906.7 649 72.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 8.4e-261 903.7 657 71.1
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 7.6e-254 880.6 651 68.7
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.1e-252 876.7 655 69.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 9.4e-252 873.6 645 70.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.5e-249 866.3 676 67.9
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.9e-249 865.9 621 72.0
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.4e-247 859.0 663 68.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.5e-246 856.3 638 69.3
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.6e-246 855.5 661 67.9
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 6.5e-245 850.9 663 65.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 2.1e-243 845.9 656 67.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 3.6e-243 845.1 674 66.3
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 4.7e-243 844.7 654 65.0
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.0e-242 843.6 667 67.8
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.5e-241 839.7 651 68.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 2.0e-241 839.3 650 67.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 9.7e-241 837.0 642 66.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.2e-240 833.9 658 66.7
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.1e-239 833.6 643 66.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 2.0e-238 829.3 647 66.6
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.5e-238 828.2 660 66.7
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 4.5e-238 828.2 653 67.2
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.2e-237 825.9 663 66.5
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.9e-237 825.5 663 63.7
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 5.0e-237 824.7 666 66.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.1e-236 823.5 648 66.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 7.2e-236 820.8 655 66.6
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 7.2e-236 820.8 655 66.6
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.1e-235 819.3 656 66.2
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.0e-234 817.0 662 65.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.1e-233 813.5 641 64.4
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.3e-233 812.0 700 62.1
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 5.7e-233 811.2 644 65.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 6.3e-232 807.7 655 63.2
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.1e-231 807.0 634 65.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 4.1e-231 805.1 660 64.1
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.3e-231 804.7 670 64.8
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.7e-230 800.8 648 64.8
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 8.5e-229 797.3 645 63.6
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.1e-228 797.0 655 64.9
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 2.5e-228 795.8 657 63.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.5e-228 795.8 647 63.1
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.0e-225 786.2 651 62.2
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.0e-225 786.2 651 61.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.1e-223 780.4 642 62.6
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 9.1e-223 777.3 648 61.7
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 4.5e-222 775.0 651 63.7
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.5e-220 770.0 646 60.8
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.6e-219 766.5 662 60.7
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.7e-219 765.8 648 61.7
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.7e-219 765.8 651 60.7
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.6e-219 765.4 686 60.5
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 9.8e-217 757.3 647 61.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.3e-216 754.2 643 61.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.2e-214 750.4 655 60.6
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 7.7e-214 747.7 665 60.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 7.7e-214 747.7 652 60.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.9e-213 745.7 610 63.6
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.5e-212 743.4 646 59.0
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 5.5e-212 741.5 644 59.9
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-211 740.0 651 59.9
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.1e-211 739.6 656 59.6
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.1e-211 739.6 650 60.9
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.3e-210 736.1 659 58.7
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 4.0e-210 735.3 655 59.5
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.5e-209 731.1 659 58.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 4.9e-208 728.4 654 58.7
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-203 713.4 598 64.4
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 8.0e-203 711.1 639 59.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.0e-201 706.4 492 71.3
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 4.4e-201 705.3 530 70.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.4e-201 705.3 569 66.3
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.5e-198 695.7 533 66.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 3.3e-196 689.1 656 56.9
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.3e-192 677.2 675 54.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.4e-191 672.9 648 57.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.4e-183 646.4 532 64.8
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.2e-182 644.0 500 64.8
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.6e-179 632.5 497 62.6
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 4.0e-178 629.0 686 51.5
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.0e-177 626.7 664 52.1
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 4.4e-169 599.0 658 50.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.2e-167 592.8 695 47.3
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.3e-167 591.3 610 55.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 5.6e-156 555.4 541 55.5
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.3e-155 554.3 486 61.9
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.1e-135 488.0 641 43.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 3.2e-135 486.5 440 60.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 5.7e-132 475.7 536 51.9
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.2e-121 441.4 752 37.6
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.1e-118 430.6 703 39.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 2.0e-113 414.1 292 76.7
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-112 411.4 388 61.6
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.0e-109 401.7 280 67.9
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-100 371.3 595 39.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 8.3e-99 365.5 339 61.7
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.7e-96 357.8 342 56.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 3.3e-95 353.6 292 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.4e-90 338.2 651 35.9
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 5.4e-90 336.3 290 65.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.4e-85 321.6 430 50.7
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 3.3e-79 300.4 494 38.3
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-70 271.6 329 48.3
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.3e-67 261.9 205 68.3
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.5e-63 248.4 176 69.9
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 2.5e-63 247.7 390 42.3
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.5e-60 238.4 382 42.7
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 8.7e-56 222.6 195 60.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.5e-55 221.1 149 71.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.4e-50 205.3 155 65.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.2e-41 175.6 121 66.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.4e-39 166.4 323 32.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.7e-35 155.2 680 28.4
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 4.5e-28 130.6 177 45.2
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.5e-18 98.2 126 47.6
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 9.4e-18 96.3 61 83.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.1e-15 89.4 71 63.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.2e-14 85.1 98 50.0
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.8e-14 84.0 92 48.9
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 6.3e-14 83.6 55 70.9
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.4e-13 81.6 113 43.4
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.4e-13 81.6 63 63.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.1e-13 81.3 57 66.7
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.2e-12 79.3 162 36.4
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 8.5e-11 73.2 113 40.7


User provided reference genes

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