Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 0.0e+00 1156.4 612 100.0
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 6.7e-268 927.2 616 78.4
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-260 902.9 612 77.5
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 9.1e-249 863.6 472 95.1
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-246 856.3 568 79.2
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 6.5e-231 804.3 613 68.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 9.1e-225 783.9 621 68.3
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 9.5e-222 773.9 625 67.4
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.6e-221 771.9 621 66.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 8.0e-221 770.8 615 65.5
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.6e-214 748.0 615 63.6
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 5.6e-214 748.0 615 63.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.6e-213 745.3 616 65.3
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.7e-213 745.0 615 63.7
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 7.8e-208 727.6 647 61.4
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.5e-206 723.4 614 62.1
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 9.5e-206 720.7 617 64.2
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 8.0e-205 717.6 625 61.9
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.0e-200 701.4 624 60.6
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 7.8e-200 701.0 619 62.8
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 5.0e-199 698.4 618 61.2
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 5.0e-199 698.4 623 61.2
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.0e-199 698.4 618 60.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-198 696.4 623 61.2
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.2e-197 691.4 615 62.3
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 2.0e-195 686.4 585 64.6
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.6e-195 686.0 623 59.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.6e-195 686.0 615 62.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.9e-193 679.9 688 56.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.0e-191 672.5 502 68.7
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.8e-188 663.3 629 57.6
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.8e-188 661.4 621 57.5
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.4e-187 658.7 563 63.2
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 4.4e-187 658.7 616 60.1
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 9.9e-187 657.5 615 57.6
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.3e-186 657.1 608 57.7
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.7e-186 656.8 639 58.1
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 8.4e-186 654.4 629 59.5
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.4e-185 653.7 619 58.2
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.2e-185 652.5 616 57.3
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 9.2e-185 651.0 615 56.3
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.5e-182 643.7 629 56.6
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-180 637.5 586 59.2
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.1e-180 637.5 620 56.3
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 3.1e-180 636.0 644 56.5
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.3e-178 630.6 630 56.7
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.2e-177 625.5 712 50.1
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 6.0e-176 621.7 625 56.2
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 7.8e-176 621.3 616 56.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.8e-176 621.3 579 57.9
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 7.8e-176 621.3 619 56.7
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 7.8e-176 621.3 712 50.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 6.6e-175 618.2 624 55.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 6.6e-175 618.2 627 55.5
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 6.6e-175 618.2 622 57.2
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.3e-174 615.9 620 56.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.6e-173 613.6 622 54.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.8e-173 612.1 625 55.4
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.4e-172 610.5 620 54.8
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 2.4e-172 609.8 625 55.2
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 6.9e-172 608.2 616 55.0
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-170 603.6 675 50.7
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.7e-170 603.6 675 50.7
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 6.4e-170 601.7 617 54.3
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.9e-169 600.1 619 55.3
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 5.4e-169 598.6 614 53.9
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 8.7e-167 591.3 620 55.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 4.3e-166 589.0 633 53.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 9.6e-166 587.8 630 54.6
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.1e-165 586.6 619 53.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 6.2e-165 585.1 650 51.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 5.3e-164 582.0 624 52.7
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 5.8e-163 578.6 631 54.0
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.6e-160 570.5 607 54.9
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.6e-160 568.9 672 49.9
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.5e-158 563.9 646 52.9
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.5e-158 563.1 619 53.3
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.3e-158 562.8 624 52.2
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.3e-158 562.8 624 52.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.1e-157 560.1 640 51.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.6e-155 553.1 625 52.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.5e-155 552.4 625 52.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 5.1e-151 538.9 614 51.5
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.0e-147 526.9 617 50.1
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.1e-145 521.2 627 50.7
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.7e-144 516.5 642 51.7
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 6.7e-143 511.9 604 50.5
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 9.7e-142 508.1 622 49.0
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 9.7e-142 508.1 580 53.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 9.7e-142 508.1 621 49.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.4e-140 504.2 630 50.0
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.6e-139 500.0 659 47.2
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 9.4e-137 491.5 617 48.8
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.0e-135 486.5 624 49.0
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 9.4e-129 464.9 409 60.6
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 8.2e-125 451.8 464 53.7
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.6e-123 446.8 655 45.2
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.6e-120 436.4 631 44.8
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.9e-113 414.1 617 44.2
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.0e-111 406.4 363 61.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.2e-111 406.0 421 54.2
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.0e-106 391.7 579 43.7
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.4e-92 344.0 310 59.7
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 9.2e-84 315.5 231 70.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.6e-83 314.7 537 38.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 2.3e-79 300.8 552 37.9
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 2.0e-70 271.2 494 37.7
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 5.6e-65 253.1 143 91.6
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 6.9e-55 219.5 278 43.5
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.1e-51 208.0 532 31.2
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.3e-50 205.3 183 55.7
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.8e-50 204.9 276 50.4
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.9e-49 201.4 290 43.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.8e-40 170.2 172 56.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.8e-39 168.3 498 30.9
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.2e-37 161.4 117 69.2
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.5e-36 156.8 198 46.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.3e-32 145.6 149 54.4
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.2e-32 144.8 133 53.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 6.9e-31 139.8 175 49.7
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.3e-29 135.6 135 54.8
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.5e-28 131.3 109 63.3
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 4.2e-28 130.6 624 26.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 9.4e-28 129.4 502 26.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 9.4e-28 129.4 108 60.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.0e-26 125.9 185 45.9
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.3e-26 124.8 113 57.5
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.0e-25 121.7 595 23.0
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.4e-23 114.8 75 70.7
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.8e-18 96.3 92 59.8
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.4e-17 93.2 81 66.7
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.8e-16 90.5 150 42.7
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.0e-14 85.1 131 37.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 3.5e-14 84.3 67 56.7
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.3e-13 82.4 70 55.7
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.5e-12 78.2 144 38.9
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.0e-10 71.2 49 67.3
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 7.7e-06 56.6 58 53.4


User provided reference genes

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