Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 8.9e-299 1029.6 570 100.0
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 3.6e-268 927.9 566 92.2
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.5e-165 587.0 567 65.4
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 4.4e-165 585.5 560 63.8
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 3.0e-97 360.1 617 43.9
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 5.2e-97 359.4 569 44.8
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 1.4e-94 351.3 581 45.6
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.0e-89 335.1 572 44.4
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.5e-83 313.9 600 40.7
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 3.3e-83 313.5 600 40.7
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.2e-82 311.6 442 49.3
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 8.0e-82 308.9 587 42.4
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 8.0e-82 308.9 571 42.9
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.0e-81 306.6 595 39.8
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 8.9e-81 305.4 578 40.7
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 2.6e-80 303.9 509 43.8
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 5.7e-80 302.8 483 46.0
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 5.7e-80 302.8 667 38.4
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 6.4e-79 299.3 330 54.5
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.8e-78 297.7 302 58.3
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.2e-77 295.0 352 52.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.6e-77 294.7 462 46.3
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.6e-77 294.7 509 42.6
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.3e-76 290.8 627 38.8
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.0e-76 290.4 627 38.8
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 3.0e-76 290.4 327 54.7
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.9e-75 287.7 668 37.3
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 9.5e-75 285.4 460 45.0
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.6e-74 284.6 494 43.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.1e-74 284.3 329 52.9
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 3.6e-74 283.5 494 43.3
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.7e-74 283.1 562 39.5
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.1e-73 282.0 454 44.5
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.8e-73 281.2 394 47.2
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 2.3e-73 280.8 573 39.3
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 4.0e-73 280.0 484 43.6
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.5e-72 278.1 411 47.9
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.5e-72 278.1 304 53.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.8e-72 276.2 462 44.8
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.3e-71 275.0 296 54.7
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.7e-71 274.6 454 44.1
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 2.9e-71 273.9 577 39.5
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.9e-71 273.1 455 42.0
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.1e-70 271.9 504 39.7
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.3e-68 265.0 522 38.5
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 2.5e-67 260.8 592 39.9
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 5.6e-67 259.6 594 38.7
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 5.6e-67 259.6 494 40.9
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.6e-66 258.1 603 38.0
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 8.1e-66 255.8 370 46.8
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.1e-65 255.4 297 52.5
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.8e-65 254.6 448 41.3
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.8e-65 254.6 444 42.3
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 5.2e-65 253.1 419 45.1
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 5.2e-65 253.1 409 44.5
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 1.2e-64 251.9 454 40.7
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.5e-64 251.5 338 48.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 2.6e-64 250.8 373 43.7
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.6e-64 250.8 373 43.7
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.9e-63 247.3 452 42.3
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.7e-63 246.9 392 46.2
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.4e-62 245.0 300 49.3
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 3.2e-62 243.8 375 45.9
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 4.1e-62 243.4 301 49.2
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 5.4e-62 243.0 401 42.4
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 5.4e-62 243.0 401 42.4
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 9.2e-62 242.3 523 39.6
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.1e-61 241.1 508 40.6
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 3.5e-61 240.4 309 51.1
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.7e-60 238.0 303 50.2
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 1.7e-60 238.0 390 45.9
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 6.6e-60 236.1 291 51.9
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 8.6e-60 235.7 498 38.6
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.5e-59 235.0 503 37.6
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.9e-59 234.6 305 48.5
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.9e-59 234.6 483 40.4
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 3.3e-59 233.8 456 40.4
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 5.6e-59 233.0 300 48.3
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 7.3e-59 232.6 389 42.4
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.1e-58 231.1 461 38.8
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 4.7e-58 229.9 430 39.5
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 6.2e-58 229.6 381 44.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.4e-57 228.4 285 50.9
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 3.1e-57 227.3 396 41.4
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 2.0e-56 224.6 417 40.3
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 2.6e-56 224.2 436 39.7
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.6e-56 224.2 481 38.5
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 3.4e-56 223.8 405 41.5
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 9.9e-56 222.2 403 42.7
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 4.9e-55 219.9 525 36.4
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 4.1e-54 216.9 427 37.9
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 1.2e-53 215.3 610 35.7
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.3e-52 211.1 446 38.3
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.9e-52 210.3 251 51.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.9e-51 208.0 508 35.6
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 6.2e-50 203.0 510 35.3
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 5.8e-48 196.4 477 37.7
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.9e-47 194.1 480 36.7
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.2e-45 188.7 315 43.2
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 2.7e-45 187.6 277 45.8
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 2.5e-43 181.0 471 36.1
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.3e-43 180.6 480 36.9
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 3.3e-43 180.6 299 40.8
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.6e-42 178.3 195 53.3
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 4.0e-41 173.7 354 38.1
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.2e-40 172.2 464 35.1
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 4.5e-40 170.2 456 36.8
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 4.5e-40 170.2 456 36.8
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 7.6e-40 169.5 426 36.2
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.7e-39 168.3 580 32.1
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.7e-39 168.3 580 32.1
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 2.2e-39 167.9 281 43.1
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.2e-39 167.9 278 42.1
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 9.3e-38 162.5 256 44.9
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.0e-36 159.1 249 43.0
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 5.8e-32 143.3 284 39.8
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.4e-31 139.8 367 35.7
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 1.4e-30 138.7 236 39.4
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.3e-28 132.1 276 37.0
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.0e-24 118.2 292 36.0
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.6e-24 117.9 250 38.0
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 9.3e-22 109.4 254 33.5
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 3.3e-19 100.9 268 37.3
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.0e-16 91.7 170 39.4
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.9e-14 85.1 275 28.4
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 3.6e-13 80.9 275 29.1
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.5e-11 75.5 99 46.5
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 4.1e-09 67.4 91 49.5
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 4.5e-08 63.9 43 69.8
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.3e-07 62.4 118 39.8
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 2.2e-07 61.6 97 43.3
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.8e-07 60.8 485 26.2
Actinidia36381 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.4e-06 56.2 79 43.0
FAN26G3170 Fragaria x ananassa HOM05D005322 ORTHO05D006746 9.4e-06 56.2 44 61.4


User provided reference genes

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