Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.3e-54 216.1 102 100.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 9.7e-47 189.9 101 86.1
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.3e-46 187.2 100 85.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.8e-45 185.7 100 85.0
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.1e-45 184.5 100 84.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 7.0e-45 183.7 89 97.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.5e-44 181.0 100 84.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 5.9e-44 180.6 99 84.8
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.0e-43 179.9 99 84.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-43 179.5 100 84.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.7e-43 179.1 100 83.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.2e-43 178.7 100 84.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.2e-43 178.7 100 82.0
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 3.8e-43 177.9 101 84.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 6.5e-43 177.2 99 81.8
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 6.5e-43 177.2 102 82.4
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 8.5e-43 176.8 101 84.2
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.5e-42 176.0 100 84.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.5e-42 175.3 101 83.2
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.5e-42 175.3 101 83.2
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.2e-42 174.5 101 83.2
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.2e-42 174.5 97 83.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.2e-42 174.5 97 83.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.2e-42 174.5 99 80.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.4e-42 173.3 101 82.2
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.4e-42 173.3 101 82.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 9.4e-42 173.3 99 85.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.2e-41 172.9 102 81.4
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.6e-41 171.4 100 78.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 4.7e-41 171.0 99 82.8
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-40 169.5 100 80.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 5.2e-40 167.5 99 76.8
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 8.8e-40 166.8 102 75.5
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.2e-39 166.4 99 76.8
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.5e-39 166.0 99 76.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.5e-39 166.0 100 77.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 5.7e-39 164.1 99 79.8
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 9.7e-39 163.3 97 82.5
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 9.7e-39 163.3 103 76.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.3e-38 162.9 99 76.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.7e-38 162.5 95 81.1
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.2e-38 162.2 100 78.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.7e-38 161.4 99 77.8
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.8e-38 161.0 102 78.4
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.8e-38 161.0 102 78.4
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 4.8e-38 161.0 105 72.4
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.8e-38 161.0 100 79.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 6.3e-38 160.6 99 78.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 6.3e-38 160.6 105 75.2
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 8.2e-38 160.2 104 74.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.1e-37 159.8 102 79.4
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-37 159.8 99 72.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.8e-37 159.1 88 83.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.4e-37 158.7 99 73.7
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.1e-37 158.3 105 75.2
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 9.1e-37 156.8 102 75.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.2e-36 156.4 100 76.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.2e-36 156.4 100 75.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.2e-36 156.4 100 75.0
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.2e-36 156.4 89 84.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-36 156.4 102 74.5
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.0e-36 155.6 100 75.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 2.0e-36 155.6 100 74.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 7.7e-36 153.7 104 72.1
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 7.7e-36 153.7 99 72.7
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.7e-35 152.5 101 74.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.7e-35 152.5 103 71.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.7e-35 152.5 100 72.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.7e-35 152.5 104 71.2
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.9e-35 151.8 97 71.1
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 5.0e-35 151.0 102 69.6
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.2e-34 148.3 103 73.8
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.2e-34 148.3 102 72.5
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 4.2e-34 147.9 97 72.2
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 4.2e-34 147.9 103 70.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.4e-34 146.7 89 79.8
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.1e-33 145.6 97 71.1
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.7e-33 145.2 100 72.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.0e-32 143.3 97 70.1
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.0e-32 143.3 97 70.1
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.0e-32 143.3 102 68.6
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.4e-32 142.9 88 76.1
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.4e-32 142.9 102 65.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.4e-32 142.9 97 70.1
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.8e-32 142.5 101 68.3
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.3e-32 142.1 101 66.3
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.3e-32 142.1 101 68.3
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.3e-32 142.1 99 68.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 5.2e-32 141.0 97 68.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 6.8e-32 140.6 98 69.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 6.8e-32 140.6 98 69.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.8e-32 140.6 85 75.3
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 8.8e-32 140.2 97 69.1
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 8.8e-32 140.2 87 79.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.2e-31 139.8 103 65.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.0e-31 139.0 88 73.9
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 2.6e-31 138.7 102 67.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.6e-31 138.7 103 68.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.7e-31 137.5 74 78.4
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 5.7e-31 137.5 101 68.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 7.5e-31 137.1 91 74.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 9.8e-31 136.7 97 70.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 9.8e-31 136.7 97 70.1
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.7e-30 134.8 104 67.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.7e-30 134.8 109 61.5
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.3e-30 134.0 103 66.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 8.3e-30 133.7 101 64.4
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.3e-30 133.7 89 73.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.1e-29 133.3 90 72.2
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.8e-29 132.5 89 70.8
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 4.1e-29 131.3 127 55.1
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.1e-29 131.3 103 63.1
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 4.1e-29 131.3 91 70.3
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.0e-29 130.6 89 76.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 9.1e-29 130.2 97 61.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.6e-28 129.4 101 66.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.7e-28 128.6 101 66.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.7e-28 128.6 99 64.6
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.5e-28 128.3 97 60.8
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.5e-28 127.9 101 64.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.5e-28 127.9 101 64.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.5e-27 124.0 89 65.2
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.5e-26 122.9 91 65.9
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 5.5e-26 120.9 76 71.1
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.5e-26 120.2 91 64.8
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.4e-23 111.7 92 62.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 7.5e-23 110.5 74 75.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 4.9e-22 107.8 78 62.8
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.6e-20 102.8 91 59.3
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.7e-20 102.1 74 74.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.3e-19 99.0 50 82.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.6e-19 97.4 75 66.7
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.6e-17 91.7 100 51.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 3.6e-17 91.7 74 63.5
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.0e-16 90.1 85 54.1
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.8e-16 87.4 74 63.5
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.5e-15 86.3 77 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.0e-15 85.9 99 51.5
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.6e-15 85.5 76 60.5
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.4e-15 84.7 109 45.9
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.9e-14 82.0 77 55.8
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.0e-12 74.3 76 55.3
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 3.0e-11 72.0 53 62.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.9e-10 69.3 72 50.0
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.5e-10 68.9 35 80.0
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 5.6e-10 67.8 52 69.2
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 5.6e-10 67.8 52 69.2
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 9.5e-10 67.0 100 38.0
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.8e-09 65.5 63 49.2
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 8.0e-09 63.9 35 77.1
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.6e-07 58.9 85 37.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 3.4e-07 58.5 59 49.2


User provided reference genes

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