Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.6e-142 509.6 300 100.0
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 4.0e-117 425.2 302 85.1
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 1.8e-112 409.8 249 99.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.1e-109 399.1 311 78.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.5e-108 396.7 313 74.4
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 6.5e-107 391.3 300 78.3
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.3e-104 383.6 302 80.1
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.0e-104 382.5 304 70.7
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 3.9e-104 382.1 298 78.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 7.4e-103 377.9 298 75.5
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.8e-102 375.9 301 75.1
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.7e-102 375.6 304 72.7
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.7e-102 375.6 298 77.2
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 8.2e-102 374.4 304 74.7
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.4e-101 373.6 301 74.8
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.8e-101 373.2 302 78.1
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 5.3e-101 371.7 306 71.6
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.2e-100 370.5 303 75.6
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.0e-100 369.8 306 76.5
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.0e-100 369.8 308 73.1
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.4e-100 369.0 303 77.6
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.9e-100 368.2 304 75.0
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.7e-99 366.7 300 71.7
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 5.0e-99 365.2 303 65.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 8.5e-99 364.4 308 68.8
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.1e-98 364.0 315 73.3
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.5e-98 362.8 304 71.7
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.5e-98 362.8 304 67.8
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.5e-98 362.8 296 76.0
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.2e-98 361.3 302 74.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.1e-97 359.8 273 78.8
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.3e-96 356.3 306 69.3
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.3e-96 356.3 314 64.6
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 3.0e-96 355.9 299 65.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 3.0e-96 355.9 301 64.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 3.9e-96 355.5 298 70.1
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.5e-95 352.8 305 66.2
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.5e-95 352.8 300 64.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.3e-95 352.1 302 70.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 9.7e-95 350.9 300 65.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.2e-94 349.7 299 67.6
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.8e-94 349.4 305 67.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 6.3e-94 348.2 298 68.5
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 6.3e-94 348.2 305 72.1
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 6.3e-94 348.2 275 79.6
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 6.3e-94 348.2 299 63.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 8.2e-94 347.8 340 67.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.4e-93 347.1 305 71.8
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-92 343.2 305 67.5
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.5e-92 342.0 269 68.8
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 5.0e-91 338.6 301 72.8
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 8.5e-91 337.8 300 70.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.1e-90 337.4 302 69.9
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 7.2e-90 334.7 291 67.0
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.9e-89 331.3 305 61.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.0e-88 329.3 305 61.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 5.1e-88 328.6 302 57.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 5.7e-87 325.1 306 66.3
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 9.7e-87 324.3 307 67.4
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.1e-85 320.9 317 66.6
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.4e-85 320.5 304 68.1
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.6e-84 317.0 335 63.3
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 8.5e-83 311.2 293 65.9
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.9e-82 310.1 298 68.8
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.8e-80 303.5 342 60.5
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.8e-80 303.5 343 60.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.0e-80 302.4 195 77.9
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 4.0e-80 302.4 284 62.3
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 5.2e-80 302.0 304 64.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 6.7e-80 301.6 302 56.6
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.3e-79 299.3 170 85.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 4.4e-79 298.9 296 67.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 7.5e-79 298.1 307 65.8
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.7e-78 297.0 303 60.7
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 3.7e-78 295.8 307 64.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.3e-78 295.0 301 63.1
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.3e-77 292.0 299 67.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.0e-76 290.0 300 63.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-76 289.7 299 67.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 3.8e-75 285.8 299 57.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 4.2e-74 282.3 301 62.8
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.0e-72 277.7 299 55.2
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.4e-71 272.3 277 64.6
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.7e-71 271.9 305 60.7
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 7.5e-71 271.6 297 59.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.7e-70 270.4 331 55.9
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.2e-70 270.0 309 59.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.7e-70 269.2 311 59.2
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 3.7e-70 269.2 273 68.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.4e-69 267.3 305 61.6
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.4e-69 267.3 305 61.6
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-68 264.2 189 68.3
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 7.7e-68 261.5 304 50.7
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 7.7e-68 261.5 304 50.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 7.7e-68 261.5 311 61.7
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.9e-67 259.6 304 60.5
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 7.2e-66 255.0 304 60.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 4.7e-65 252.3 304 51.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 4.7e-65 252.3 304 51.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 4.7e-65 252.3 304 51.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.3e-64 250.0 307 49.8
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.2e-63 247.7 307 58.0
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.7e-62 243.8 362 52.5
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.4e-61 240.7 307 59.6
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.0e-61 238.4 303 55.8
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.2e-60 237.7 304 53.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.0e-60 236.9 295 61.4
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 3.3e-58 229.6 273 60.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.1e-57 225.3 189 63.5
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 9.8e-55 218.0 178 64.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 6.4e-46 188.7 120 75.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 6.0e-44 182.2 137 68.6
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-43 181.0 158 59.5
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 8.6e-43 178.3 118 71.2
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.0e-40 169.5 186 52.2
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.1e-37 161.4 162 75.9
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 7.1e-37 158.7 224 46.4
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.4e-32 144.4 79 86.1
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 9.6e-26 121.7 66 87.9
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.2e-25 121.3 136 51.5
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.4e-21 107.8 128 62.5
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 4.2e-21 106.3 98 58.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-20 104.4 97 58.8
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.6e-20 104.4 97 58.8
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 6.2e-17 92.4 133 47.4
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.5e-15 86.3 46 84.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 4.9e-14 82.8 55 70.9
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-13 80.5 55 69.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 7.9e-12 75.5 57 70.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 8.7e-11 72.0 66 62.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.4e-08 63.9 101 41.6
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.1e-08 63.5 66 60.6
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.2e-07 61.6 59 52.5
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.5e-07 61.2 29 89.7
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.4e-07 60.1 105 39.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.9e-07 58.5 124 34.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.7e-06 57.8 105 38.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.2e-06 57.4 60 48.3
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.9e-06 57.0 101 36.6
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.9e-06 57.0 105 34.3
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 2.9e-06 57.0 107 36.4
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 2.9e-06 57.0 96 39.6
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 3.8e-06 56.6 56 48.2
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.8e-06 56.6 114 36.0
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 4.9e-06 56.2 56 48.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 4.9e-06 56.2 53 49.1
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 4.9e-06 56.2 96 38.5
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 6.4e-06 55.8 77 40.3
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 6.4e-06 55.8 42 59.5
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 6.4e-06 55.8 75 44.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 6.4e-06 55.8 75 44.0


User provided reference genes

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