Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.0e-66 256.5 125 100.0
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.7e-51 204.5 108 91.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.8e-47 192.6 113 83.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.5e-45 184.1 107 83.2
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 8.5e-45 183.7 108 80.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.4e-39 165.6 111 78.4
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.5e-38 161.8 111 76.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-37 160.2 111 75.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.0e-37 157.9 108 73.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 8.6e-37 157.1 111 72.1
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-36 156.8 108 72.2
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.1e-36 156.8 108 72.2
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-36 156.0 108 72.2
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 3.3e-36 155.2 107 72.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.5e-36 154.5 105 72.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.5e-36 154.5 107 71.0
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 9.5e-36 153.7 105 74.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 9.5e-36 153.7 108 68.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.5e-36 153.7 110 70.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.6e-35 152.9 107 72.9
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.1e-35 152.5 108 69.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.1e-35 152.5 108 71.3
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.1e-35 152.5 108 67.6
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.1e-35 152.5 108 66.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 3.6e-35 151.8 108 68.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.6e-35 151.8 114 66.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 4.7e-35 151.4 108 72.2
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 4.7e-35 151.4 107 72.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 6.1e-35 151.0 109 67.9
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.1e-35 151.0 111 73.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.0e-34 150.2 105 72.4
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.4e-34 149.8 109 72.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-34 149.4 110 67.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-34 149.1 109 67.9
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.0e-34 148.7 109 67.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.2e-34 147.9 107 72.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.8e-34 147.5 109 67.0
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 6.8e-34 147.5 107 68.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-34 147.1 108 70.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-34 147.1 108 70.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 8.9e-34 147.1 108 70.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.5e-33 146.4 89 78.7
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.5e-33 146.4 109 67.9
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.0e-33 146.0 109 68.8
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.0e-33 146.0 110 66.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.6e-33 145.6 108 72.2
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.4e-33 144.8 110 69.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 7.5e-33 144.1 103 68.9
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.3e-32 143.3 105 69.5
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.7e-32 142.9 107 62.6
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.2e-32 142.5 107 62.6
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.2e-32 142.5 109 66.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.8e-32 142.1 107 62.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.8e-32 142.1 109 66.1
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 3.7e-32 141.7 116 65.5
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.7e-32 141.7 107 62.6
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 4.9e-32 141.4 107 61.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.9e-32 141.4 90 73.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 6.3e-32 141.0 141 55.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 6.3e-32 141.0 110 67.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.3e-32 141.0 108 66.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 6.3e-32 141.0 85 80.0
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 8.3e-32 140.6 119 63.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-31 140.2 152 55.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-31 139.8 107 61.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.4e-31 139.8 114 61.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.8e-31 139.4 90 75.6
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-31 139.4 107 62.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.8e-31 139.4 107 61.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.4e-31 139.0 111 62.2
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.1e-31 138.7 107 61.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.1e-31 138.7 94 75.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.1e-31 138.3 87 73.6
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 4.1e-31 138.3 83 81.9
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.4e-31 137.9 82 81.7
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 7.0e-31 137.5 107 60.7
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 9.2e-31 137.1 107 59.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 9.2e-31 137.1 95 74.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-30 136.7 107 60.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.6e-30 136.3 110 68.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.0e-30 136.0 107 60.7
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.0e-30 136.0 87 71.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.5e-30 134.8 105 66.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 5.9e-30 134.4 86 72.1
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 5.9e-30 134.4 99 69.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 5.9e-30 134.4 107 60.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.9e-30 134.4 137 54.7
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 7.8e-30 134.0 111 68.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.0e-29 133.7 105 65.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.0e-29 133.7 106 57.5
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.3e-29 133.3 107 59.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.3e-29 133.3 109 64.2
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.7e-29 132.9 107 62.6
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.7e-29 132.9 108 59.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.3e-29 132.5 105 62.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.3e-29 132.5 108 61.1
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.9e-29 132.1 105 62.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.9e-29 132.1 87 72.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.8e-29 131.7 107 61.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 5.0e-29 131.3 107 57.9
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 6.6e-29 131.0 86 72.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.6e-29 130.6 110 62.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.6e-29 130.6 101 65.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-28 130.2 108 61.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.5e-28 129.0 108 60.2
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.3e-28 128.3 82 76.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 7.3e-28 127.5 80 78.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.3e-28 127.5 86 72.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 9.5e-28 127.1 109 59.6
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.6e-27 125.2 107 57.0
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.1e-27 124.4 107 57.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 8.0e-27 124.0 82 73.2
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.3e-26 122.5 109 60.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.0e-26 122.1 153 46.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.0e-26 121.7 95 63.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-25 120.2 83 72.3
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.5e-25 119.8 86 70.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 4.4e-25 118.2 83 71.1
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 5.8e-25 117.9 122 54.1
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.5e-25 117.5 121 57.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 7.5e-25 117.5 118 50.8
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.3e-24 116.7 118 52.5
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.2e-24 115.9 76 73.7
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 5.4e-23 111.3 116 55.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.7e-22 109.0 99 62.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.0e-22 107.8 95 66.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.8e-22 107.5 79 60.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.8e-22 107.5 79 60.8
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.0e-21 107.1 91 60.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.7e-21 106.3 85 63.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 8.6e-21 104.0 78 62.8
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-20 103.6 68 72.1
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.1e-20 103.6 78 62.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.5e-20 103.2 79 59.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.9e-20 102.8 105 55.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.5e-20 102.4 79 63.3
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.5e-20 102.4 92 56.5
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.6e-20 101.3 91 56.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.3e-20 100.9 76 64.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 8.0e-19 97.4 88 62.5
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-18 97.1 83 61.4
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.2e-18 94.7 80 61.2
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.7e-16 88.6 69 59.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.4e-15 86.7 77 59.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.4e-15 84.7 79 50.6
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.7e-14 82.4 62 69.4
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 7.8e-14 80.9 69 58.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-13 80.1 67 58.2
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-13 80.1 67 58.2
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.9e-12 76.3 85 49.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 5.6e-12 74.7 63 57.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.6e-11 73.2 68 54.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.1e-11 72.8 48 75.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-11 72.8 54 66.7
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 4.7e-11 71.6 72 48.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.3e-10 69.3 52 65.4
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.8e-10 67.8 53 60.4
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-07 60.1 73 43.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 1.4e-07 60.1 65 46.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.4e-07 60.1 65 46.2
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-07 59.7 57 59.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-06 57.0 48 62.5
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 2.7e-06 55.8 67 44.8


User provided reference genes

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