Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.1e-115 420.2 261 100.0
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.5e-94 349.4 223 94.2
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.2e-94 349.0 259 75.3
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.8e-84 316.6 251 69.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.6e-82 310.1 228 71.9
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.2e-82 307.8 247 68.8
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 8.2e-82 307.8 254 68.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 8.2e-82 307.8 229 83.0
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.0e-79 300.8 234 79.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.3e-79 300.4 242 69.0
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.5e-78 295.0 222 76.6
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 7.2e-78 294.7 240 66.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 3.9e-76 288.9 253 62.8
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.1e-75 287.3 222 68.5
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-75 287.3 232 66.4
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.5e-75 287.0 235 63.0
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.0e-75 286.6 272 62.5
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.0e-75 286.6 229 68.1
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.3e-75 285.8 253 62.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.3e-75 285.8 222 70.3
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.7e-74 283.5 271 59.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.7e-74 283.5 258 69.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.1e-73 280.8 251 62.9
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.1e-73 280.8 271 57.9
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.4e-73 280.4 242 74.4
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.1e-73 278.9 244 63.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 5.3e-73 278.5 231 64.5
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 6.9e-73 278.1 242 63.6
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.2e-72 277.3 250 61.6
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.4e-72 275.8 251 61.4
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.7e-71 273.5 240 62.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.5e-71 271.6 240 71.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 6.5e-71 271.6 212 66.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-70 270.8 240 72.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.1e-70 270.8 240 72.9
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.1e-70 270.8 236 61.4
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.9e-70 270.0 205 78.0
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 4.2e-70 268.9 223 63.2
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 7.2e-70 268.1 261 58.2
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 9.4e-70 267.7 244 66.0
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-69 267.3 211 66.4
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 3.6e-69 265.8 199 68.8
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 3.6e-69 265.8 237 61.2
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 7.9e-69 264.6 234 59.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 5.1e-68 261.9 211 65.9
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 4.4e-67 258.8 217 67.3
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.7e-67 258.5 222 62.2
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.3e-66 257.3 204 65.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.7e-66 256.9 238 58.4
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 3.7e-66 255.8 217 64.1
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 6.3e-66 255.0 242 57.4
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.1e-65 254.2 216 64.4
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.4e-65 253.1 215 61.4
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.2e-64 250.8 209 63.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.2e-64 250.8 268 54.5
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.3e-63 247.3 210 65.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.2e-63 246.5 222 59.0
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 3.8e-63 245.7 222 63.1
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 8.5e-63 244.6 221 53.8
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.9e-62 243.4 202 60.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 7.2e-62 241.5 236 57.2
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 7.2e-62 241.5 243 56.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 9.4e-62 241.1 222 59.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.1e-61 240.0 204 63.7
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.7e-61 239.6 245 64.9
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.7e-61 239.6 245 64.9
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 3.6e-61 239.2 230 57.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.4e-60 237.3 209 59.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.4e-60 237.3 247 64.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.1e-59 234.2 217 56.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 7.5e-59 231.5 231 55.0
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.7e-58 230.3 242 55.8
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 2.2e-58 229.9 235 63.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.8e-58 229.6 206 60.2
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.7e-58 229.2 213 58.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.8e-58 228.8 193 60.6
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 6.3e-58 228.4 209 56.0
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 8.2e-58 228.0 208 57.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.4e-57 227.3 227 54.2
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 4.1e-57 225.7 221 53.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 3.5e-56 222.6 214 55.1
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.0e-55 221.1 221 64.3
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.3e-55 220.7 207 54.1
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 5.0e-55 218.8 241 49.0
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.5e-54 216.5 210 59.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.5e-54 216.5 209 68.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.2e-54 216.1 234 49.6
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 4.2e-54 215.7 225 56.4
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 7.2e-54 214.9 225 56.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.2e-54 214.9 230 52.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 9.4e-54 214.5 210 65.7
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 9.4e-54 214.5 229 51.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.1e-53 213.4 223 52.5
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.1e-53 213.4 223 52.5
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.7e-53 213.0 200 57.0
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.7e-53 213.0 247 49.4
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 8.0e-53 211.5 223 52.5
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.0e-53 211.5 223 52.5
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 1.8e-52 210.3 230 53.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.3e-52 209.9 210 57.1
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.5e-51 207.2 237 50.2
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.0e-51 206.8 207 55.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 4.4e-51 205.7 210 57.1
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.7e-50 203.8 202 52.5
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 2.8e-50 203.0 200 52.5
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.4e-49 200.7 188 54.3
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.8e-49 200.3 240 53.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 9.1e-49 198.0 223 60.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 4.5e-48 195.7 191 56.5
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.9e-48 195.3 202 60.9
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.9e-48 195.3 202 60.9
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.7e-47 193.7 190 53.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.2e-47 193.4 211 50.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.2e-47 193.4 211 50.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.2e-47 193.4 211 50.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.8e-47 192.6 211 50.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 5.0e-47 192.2 232 56.5
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 6.5e-47 191.8 203 51.7
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-46 191.0 249 45.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-46 190.7 200 52.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.9e-46 190.3 271 46.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.5e-46 189.9 248 44.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 7.2e-46 188.3 267 42.3
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.6e-45 186.0 202 60.9
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.6e-45 186.0 216 47.7
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 4.7e-45 185.7 152 63.2
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 1.4e-44 184.1 212 61.3
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 4.0e-44 182.6 207 48.3
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.6e-43 179.9 206 48.5
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.4e-43 179.1 202 49.0
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.7e-43 178.7 255 45.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.5e-43 178.3 206 48.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 9.8e-43 177.9 266 40.6
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.8e-42 176.4 155 59.4
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.7e-42 176.0 206 59.7
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.7e-42 176.0 181 50.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 6.3e-42 175.3 206 57.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.1e-41 174.5 208 46.6
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.8e-41 173.7 202 57.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.8e-41 173.7 202 57.4
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.9e-40 168.7 204 59.3
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 7.7e-40 168.3 183 52.5
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.0e-39 167.9 194 50.0
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.8e-39 166.0 193 57.0
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.1e-38 164.5 207 44.0
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.5e-38 164.1 196 59.2
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.3e-38 161.8 198 57.1
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.0e-36 157.9 197 56.3
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 4.0e-36 156.0 129 64.3
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-35 154.1 189 44.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 9.2e-33 144.8 228 42.5
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 2.7e-32 143.3 149 57.0
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 5.6e-30 135.6 132 59.1
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 3.4e-27 126.3 194 39.7
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 7.5e-27 125.2 156 45.5
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.7e-26 122.9 199 49.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.7e-26 122.9 159 56.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.0e-25 118.6 159 56.0
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.7e-24 116.7 247 32.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.8e-24 115.2 90 72.2
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.7e-23 114.0 213 32.9
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 3.9e-23 112.8 160 46.9
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.8e-20 102.1 69 82.6
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 8.9e-20 101.7 87 60.9
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 4.3e-14 82.8 64 64.1
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-13 80.9 63 66.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.8e-11 72.4 157 35.7
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.1e-08 63.9 41 75.6
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.3e-07 61.2 74 47.3


User provided reference genes

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