Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.9e-91 337.0 163 100.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.9e-61 238.8 160 74.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 3.6e-59 231.9 161 72.7
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 3.7e-48 195.3 158 62.7
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 3.7e-48 195.3 166 56.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 4.8e-48 194.9 165 56.4
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.8e-47 193.0 160 55.0
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 9.1e-47 190.7 166 56.0
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.5e-46 188.7 157 57.3
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.2e-44 182.2 165 54.5
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.2e-44 182.2 174 54.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 2.1e-43 179.5 144 61.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.0e-42 177.2 152 60.5
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-42 176.8 149 55.7
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 3.0e-42 175.6 163 53.4
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 8.8e-42 174.1 152 60.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 3.4e-41 172.2 150 55.3
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.4e-41 171.8 141 61.7
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 7.5e-41 171.0 141 61.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 9.7e-41 170.6 150 57.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-40 170.2 138 61.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.7e-40 169.9 155 54.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.8e-39 166.4 147 55.8
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.8e-39 166.4 150 56.7
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.4e-39 166.0 162 52.5
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.3e-39 164.9 138 58.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.2e-38 163.7 144 55.6
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.7e-38 162.5 131 60.3
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.7e-35 152.5 142 50.0
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.7e-35 151.8 119 53.8
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.7e-35 151.8 119 53.8
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.7e-35 151.8 119 53.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.7e-35 151.8 119 53.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 6.1e-35 151.4 104 63.5
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 8.0e-35 151.0 123 56.1
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.8e-34 149.8 127 61.4
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.3e-34 149.4 129 54.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.0e-34 149.1 117 57.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 3.0e-34 149.1 142 51.4
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.0e-34 148.7 138 50.7
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.2e-33 147.1 153 48.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.7e-33 144.8 117 57.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.7e-32 143.3 113 50.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.2e-32 142.9 123 51.2
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 2.8e-32 142.5 106 55.7
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 3.7e-32 142.1 122 53.3
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 3.7e-32 142.1 116 52.6
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.7e-32 142.1 106 56.6
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 4.8e-32 141.7 129 46.5
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 6.3e-32 141.4 128 46.9
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 6.3e-32 141.4 129 50.4
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.3e-32 141.0 120 52.5
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 8.3e-32 141.0 143 44.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 8.3e-32 141.0 128 50.8
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.1e-31 140.6 143 44.1
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.4e-31 140.2 122 49.2
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.4e-31 140.2 163 41.7
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.8e-31 139.8 100 59.0
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.8e-31 139.8 143 44.1
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.8e-31 139.8 129 45.7
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.4e-31 139.4 142 45.8
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.1e-31 139.0 138 47.1
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.1e-31 139.0 106 54.7
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.1e-31 139.0 100 56.0
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 3.1e-31 139.0 122 52.5
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 4.1e-31 138.7 104 54.8
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 4.1e-31 138.7 108 51.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 4.1e-31 138.7 98 57.1
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.1e-31 138.7 103 52.4
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.4e-31 138.3 162 43.8
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 5.4e-31 138.3 98 58.2
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 7.0e-31 137.9 98 57.1
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.2e-30 137.1 99 56.6
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-30 137.1 124 48.4
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.6e-30 136.7 139 46.8
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.5e-30 135.6 142 44.4
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 3.5e-30 135.6 165 38.8
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 4.5e-30 135.2 137 46.0
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 5.9e-30 134.8 146 43.8
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 5.9e-30 134.8 119 52.9
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 7.7e-30 134.4 98 57.1
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.0e-29 134.0 151 47.7
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.0e-29 134.0 110 52.7
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.0e-29 134.0 110 52.7
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.0e-29 134.0 110 52.7
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.0e-29 134.0 66 93.9
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.0e-29 134.0 103 54.4
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.3e-29 133.7 103 51.5
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.3e-29 132.9 122 47.5
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.9e-29 132.5 119 51.3
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 2.9e-29 132.5 102 53.9
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 3.8e-29 132.1 131 47.3
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 5.0e-29 131.7 98 58.2
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 5.0e-29 131.7 145 44.1
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 5.0e-29 131.7 134 50.7
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 6.6e-29 131.3 129 48.1
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-28 130.6 90 63.3
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.5e-28 130.2 98 58.2
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.9e-28 129.8 115 55.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.9e-28 129.8 125 48.0
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 3.3e-28 129.0 127 44.9
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 4.2e-28 128.6 168 42.9
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 4.2e-28 128.6 96 56.2
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 5.5e-28 128.3 158 41.1
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 7.2e-28 127.9 98 55.1
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 7.2e-28 127.9 108 47.2
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.6e-27 126.7 98 55.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.6e-27 126.7 124 50.0
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.1e-27 126.3 127 47.2
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.1e-27 126.3 108 50.9
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.8e-27 125.9 95 56.8
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.8e-26 123.2 139 40.3
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 4.0e-26 122.1 120 48.3
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 5.2e-26 121.7 116 47.4
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 6.8e-26 121.3 117 48.7
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 8.9e-26 120.9 102 52.0
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 8.9e-26 120.9 100 58.0
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 8.9e-26 120.9 121 43.0
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.2e-25 120.6 93 54.8
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.2e-25 120.6 106 48.1
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.5e-25 120.2 103 50.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.5e-25 120.2 98 53.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.5e-25 120.2 103 51.5
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 2.0e-25 119.8 107 48.6
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.4e-25 119.0 99 50.5
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 7.5e-25 117.9 84 56.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 9.8e-25 117.5 89 53.9
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 9.8e-25 117.5 97 50.5
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-24 117.1 103 47.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.7e-24 116.7 139 40.3
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 2.8e-24 115.9 139 40.3
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 3.7e-24 115.5 139 40.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-23 114.0 98 51.0
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.1e-23 114.0 106 43.4
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.4e-23 113.6 103 45.6
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.4e-23 113.6 109 42.2
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 3.2e-23 112.5 108 44.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.4e-23 111.7 95 50.5
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 5.4e-23 111.7 95 50.5
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 7.0e-23 111.3 98 44.9
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 7.0e-23 111.3 124 38.7
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 7.0e-23 111.3 118 45.8
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 9.2e-23 110.9 93 51.6
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 9.2e-23 110.9 84 53.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.6e-22 110.2 98 42.9
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.9e-22 108.2 108 45.4
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.9e-22 108.2 93 50.5
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.8e-22 107.8 97 46.4
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.0e-21 107.5 98 43.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.0e-21 107.5 102 42.2
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.0e-21 107.5 106 43.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.7e-21 106.7 107 43.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.3e-21 106.3 98 42.9
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.9e-21 105.9 93 46.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 3.9e-21 105.5 98 42.9
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 3.9e-21 105.5 98 42.9
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 3.9e-21 105.5 98 42.9
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 3.9e-21 105.5 98 42.9
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.0e-21 105.1 126 41.3
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 8.6e-21 104.4 116 44.0
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 1.9e-20 103.2 115 43.5
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.5e-20 100.9 114 37.7
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.5e-20 100.9 106 41.5
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.1e-19 99.8 101 45.5
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.8e-19 99.4 99 45.5
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.7e-19 98.6 91 49.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 6.1e-19 98.2 93 44.1
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.0e-18 97.4 98 44.9
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 3.1e-18 95.9 95 45.3
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.3e-16 90.5 118 38.1
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 4.9e-16 88.6 83 45.8
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 4.9e-16 88.6 86 46.5
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 6.4e-16 88.2 113 40.7
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 6.6e-13 78.2 144 38.9
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 8.6e-13 77.8 55 58.2
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.9e-12 76.6 58 53.4
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 8.0e-11 71.2 107 35.5
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.8e-10 70.1 66 50.0
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 2.3e-10 69.7 125 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 9.8e-09 64.3 107 37.4
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.9e-07 60.1 126 34.9
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.4e-07 59.7 115 37.4
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 3.2e-07 59.3 81 32.1
Hma1.2p1_0161F.1_g072120 Hydrangea macrophylla HOM05D008739 ORTHO05D010871 6.0e-06 55.1 122 27.0


User provided reference genes

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