Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.5e-245 851.7 426 100.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 8.2e-172 607.4 397 80.6
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.3e-142 509.6 282 90.1
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 7.4e-141 504.6 280 88.9
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 2.6e-138 496.1 282 85.8
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-136 490.3 271 88.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.6e-135 485.7 282 84.4
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 8.0e-135 484.6 271 87.1
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 8.0e-135 484.6 279 84.6
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.0e-134 484.2 278 83.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 6.7e-134 481.5 276 85.1
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 8.8e-134 481.1 271 86.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.2e-133 480.7 271 86.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-133 480.3 271 86.7
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.5e-133 480.3 282 83.3
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.6e-133 479.6 278 82.7
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 4.4e-133 478.8 282 82.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.5e-133 478.0 282 83.3
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 7.5e-133 478.0 279 83.2
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.8e-132 476.1 274 85.8
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.8e-132 475.3 280 82.1
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 4.8e-132 475.3 282 82.3
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 6.3e-132 474.9 282 82.3
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.1e-131 474.2 274 85.8
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.1e-131 472.6 275 84.4
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.1e-131 472.2 280 82.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 4.1e-131 472.2 279 82.8
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 4.1e-131 472.2 278 83.5
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.3e-131 471.9 274 84.7
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.3e-131 471.9 274 84.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 7.0e-131 471.5 274 82.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.0e-129 467.6 276 82.2
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.3e-129 467.2 273 81.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.7e-129 466.8 273 83.2
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.7e-129 466.8 272 82.7
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 2.2e-129 466.5 272 83.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.9e-129 466.1 271 83.4
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.9e-129 466.1 273 83.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 3.8e-129 465.7 279 81.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.8e-129 465.7 272 83.1
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 5.0e-129 465.3 272 83.5
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 6.5e-129 464.9 273 83.2
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-128 464.2 272 82.4
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.1e-128 464.2 272 82.4
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.1e-128 464.2 272 82.4
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.1e-128 464.2 273 81.3
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 1.5e-128 463.8 277 80.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.9e-128 463.4 272 82.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.9e-128 463.4 272 82.4
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.9e-128 463.4 273 82.8
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.9e-128 463.4 273 81.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.5e-128 463.0 272 82.7
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 5.5e-128 461.8 275 80.4
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.2e-128 461.5 279 79.6
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 9.4e-128 461.1 277 80.9
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 9.4e-128 461.1 271 82.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-127 460.7 272 82.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-127 460.3 277 80.1
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.6e-127 460.3 271 81.9
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.6e-127 460.3 273 81.7
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.1e-127 459.9 273 81.3
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 8.0e-127 458.0 277 80.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 8.0e-127 458.0 273 81.0
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.0e-126 457.6 272 80.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.3e-126 456.4 274 82.1
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.3e-126 456.4 273 79.9
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 3.0e-126 456.1 272 81.2
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.0e-126 455.7 272 81.2
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.6e-125 453.0 274 80.3
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 2.6e-125 453.0 274 80.7
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 4.4e-125 452.2 273 80.2
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 7.5e-125 451.4 276 77.9
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.8e-125 451.1 273 80.2
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 3.7e-124 449.1 274 80.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 4.8e-124 448.7 276 78.6
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-123 446.8 273 78.8
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.1e-123 446.0 273 78.8
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.1e-123 445.7 257 85.2
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 9.1e-123 444.5 273 78.8
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 9.1e-123 444.5 262 82.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 4.5e-122 442.2 273 79.5
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 3.8e-121 439.1 273 78.4
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.5e-120 437.2 305 72.8
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.5e-120 437.2 273 76.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.5e-120 436.4 281 77.2
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.5e-120 436.4 273 77.3
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.3e-120 436.0 307 71.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.2e-120 434.9 270 80.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 6.1e-119 431.8 394 60.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 8.0e-119 431.4 279 76.0
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 8.0e-119 431.4 272 76.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 2.3e-118 429.9 273 75.5
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.0e-118 429.5 265 78.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 4.0e-118 429.1 303 70.6
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 6.8e-118 428.3 283 75.6
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.9e-114 415.2 291 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 5.6e-112 408.7 271 70.1
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 8.0e-111 404.8 271 70.5
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 4.0e-110 402.5 271 70.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 6.8e-110 401.7 272 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.5e-109 400.6 271 69.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.5e-109 400.6 243 81.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.4e-107 393.3 271 74.9
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.6e-106 390.6 246 76.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.0e-106 390.2 242 77.3
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.7e-105 387.1 222 84.7
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.1e-104 384.4 271 68.3
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.9e-104 383.6 224 82.6
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-99 367.9 251 75.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 3.5e-98 362.8 276 64.5
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.3e-96 355.9 221 79.2
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.2e-95 354.4 197 86.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 9.9e-93 344.7 271 63.5
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.9e-88 330.5 272 61.8
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 9.5e-88 328.2 271 63.5
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.6e-87 327.4 273 58.2
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 3.6e-87 326.2 271 63.1
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 3.6e-87 326.2 294 55.8
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.0e-81 308.1 181 80.7
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-81 307.8 273 59.7
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.2e-75 286.2 168 82.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 7.1e-75 285.4 272 55.1
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 6.0e-74 282.3 276 50.7
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 6.0e-74 282.3 249 61.4
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.9e-67 260.8 152 78.3
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.9e-67 260.8 152 85.5
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 3.5e-66 256.5 165 78.8
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.7e-63 246.5 206 64.1
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 4.5e-53 213.0 154 68.2
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 7.6e-53 212.2 284 45.4
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.0e-52 211.8 273 47.6
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.2e-51 206.5 272 48.2
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.4e-48 195.7 184 57.6
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 4.8e-39 166.4 148 64.9
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.0e-36 158.7 277 41.9
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 3.6e-34 150.2 285 38.9
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.0e-33 147.1 95 71.6
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 5.3e-30 136.3 114 62.3
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 4.5e-29 133.3 185 46.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.5e-27 128.3 79 74.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.2e-27 125.9 92 67.4
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 5.2e-25 119.8 135 48.9
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.4e-24 116.7 135 48.1
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.7e-21 105.9 73 71.2
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 7.5e-16 89.4 56 71.4
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 6.5e-12 76.3 90 46.7
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 6.5e-12 76.3 45 80.0
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 7.2e-11 72.8 45 84.4
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 7.2e-11 72.8 49 73.5


User provided reference genes

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