Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.8e-173 612.5 298 100.0
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 4.4e-156 554.7 298 92.3
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.4e-106 390.2 249 79.9
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 4.8e-94 348.6 250 71.6
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 2.4e-93 346.3 251 71.7
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 2.6e-92 342.8 250 73.2
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 2.6e-92 342.8 262 69.1
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 1.0e-91 340.9 256 69.1
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 1.3e-91 340.5 250 72.4
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.7e-91 340.1 256 69.1
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 8.4e-91 337.8 251 69.7
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.4e-90 337.0 247 72.1
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.9e-90 336.7 251 71.7
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.5e-90 336.3 247 71.7
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 2.5e-90 336.3 283 64.3
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 5.5e-90 335.1 217 77.0
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 9.3e-90 334.3 250 71.2
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.2e-89 334.0 248 69.0
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.1e-89 333.2 251 70.9
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.1e-89 333.2 251 71.3
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 3.5e-89 332.4 247 71.3
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 4.6e-89 332.0 250 70.8
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 4.6e-89 332.0 246 69.5
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 4.6e-89 332.0 251 69.3
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 3.0e-88 329.3 249 69.1
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 5.1e-88 328.6 213 76.1
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.5e-87 327.0 254 69.3
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 1.5e-87 327.0 248 69.8
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 1.9e-87 326.6 248 70.2
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 4.3e-87 325.5 247 67.6
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 4.3e-87 325.5 210 76.7
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 9.6e-87 324.3 251 66.9
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.1e-85 320.9 244 70.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 1.1e-85 320.9 249 69.5
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 4.1e-85 318.9 244 70.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 5.3e-85 318.5 251 67.3
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 5.3e-85 318.5 250 68.4
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.4e-84 315.8 254 66.9
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 4.5e-84 315.5 248 65.7
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.0e-83 314.3 267 62.5
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.0e-83 314.3 248 66.9
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 1.7e-83 313.5 250 67.2
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 3.8e-83 312.4 244 68.9
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 3.8e-83 312.4 250 66.0
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 5.0e-83 312.0 251 66.5
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 5.0e-83 312.0 254 66.1
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 5.5e-82 308.5 212 72.6
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 1.2e-81 307.4 248 64.1
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.7e-81 306.2 227 69.6
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.3e-80 303.1 249 65.5
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.3e-80 303.1 240 66.7
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 5.1e-80 302.0 249 63.9
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 8.7e-80 301.2 249 64.7
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.5e-79 300.4 320 55.9
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.5e-79 300.4 255 65.1
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.9e-79 300.1 252 65.5
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 1.9e-79 300.1 249 63.9
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 1.9e-79 300.1 249 63.9
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 3.3e-79 299.3 249 64.7
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 4.3e-79 298.9 249 64.3
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 4.3e-79 298.9 204 72.5
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 5.7e-79 298.5 249 63.1
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 5.7e-79 298.5 240 66.7
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 9.7e-79 297.7 223 68.6
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 9.7e-79 297.7 263 60.1
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.6e-78 297.0 259 62.5
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 2.2e-78 296.6 258 63.6
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 2.8e-78 296.2 247 64.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 3.7e-78 295.8 249 63.1
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 3.7e-78 295.8 249 63.9
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 4.8e-78 295.4 249 64.7
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.4e-77 293.1 245 61.2
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 3.1e-77 292.7 202 74.3
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 6.9e-77 291.6 250 63.6
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.5e-76 290.4 249 63.1
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 1.0e-75 287.7 196 74.0
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 3.8e-75 285.8 259 61.8
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.9e-74 283.5 247 64.0
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.9e-74 283.5 205 69.8
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 5.5e-74 282.0 242 60.7
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 2.7e-73 279.6 259 59.5
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 6.1e-73 278.5 214 67.3
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 1.4e-72 277.3 196 74.5
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.8e-72 276.9 216 66.7
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 2.0e-71 273.5 227 64.3
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 4.3e-71 272.3 255 59.6
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 3.7e-70 269.2 249 60.2
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.4e-69 266.5 258 59.7
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.2e-68 264.2 159 79.2
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 7.7e-68 261.5 221 64.7
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.9e-66 256.9 158 77.8
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.9e-66 256.9 217 61.8
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 3.9e-64 249.2 327 48.3
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.0e-63 246.9 183 71.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 2.0e-63 246.9 174 69.0
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 2.2e-62 243.4 188 69.7
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.2e-59 233.4 207 58.0
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 5.0e-59 232.3 149 74.5
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 5.7e-55 218.8 184 65.2
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.7e-54 217.2 159 69.8
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.8e-54 216.5 175 62.3
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 4.1e-53 212.6 286 49.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 7.0e-53 211.8 142 74.6
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.5e-50 204.1 138 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 9.8e-47 191.4 153 61.4
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 8.3e-46 188.3 170 54.7
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.5e-42 176.8 161 54.0
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 7.2e-42 175.3 187 50.8
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.4e-37 160.2 160 50.0
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 9.2e-37 158.3 239 41.8
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.5e-31 138.7 82 82.9
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.1e-29 134.8 82 81.7
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.4e-29 134.4 117 58.1
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 1.8e-29 134.0 168 53.0
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.9e-28 129.0 164 43.9
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.0e-27 126.7 69 81.2
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.9e-27 126.3 77 81.8
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.2e-23 114.8 59 89.8
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 2.0e-23 114.0 116 54.3
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 9.2e-21 105.1 108 56.5
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.7e-19 100.9 98 42.9
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 2.5e-18 97.1 161 37.3
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.2e-17 94.7 51 82.4
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.3e-14 84.7 45 84.4
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-14 84.7 58 70.7
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-12 77.8 44 79.5
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 2.8e-09 67.0 92 44.6


User provided reference genes

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