Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 1.3e-45 187.2 213 100.0
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 8.3e-24 114.8 64 95.3
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 9.2e-23 111.3 63 92.1
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 1.6e-22 110.5 63 92.1
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 3.3e-20 102.8 64 84.4
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 1.6e-19 100.5 64 82.8
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 4.7e-19 99.0 62 85.5
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 4.7e-19 99.0 64 81.2
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 6.2e-19 98.6 64 81.2
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 6.2e-19 98.6 64 78.1
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 8.0e-19 98.2 63 81.0
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.0e-18 97.8 63 81.0
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 1.4e-18 97.4 64 79.7
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.3e-18 96.7 63 79.4
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.3e-18 96.7 63 79.4
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 2.3e-18 96.7 64 79.7
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 2.3e-18 96.7 63 79.4
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 3.1e-18 96.3 61 83.6
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 3.1e-18 96.3 61 82.0
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 4.0e-18 95.9 63 79.4
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 4.0e-18 95.9 61 82.0
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 6.8e-18 95.1 63 77.8
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 6.8e-18 95.1 64 76.6
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 8.9e-18 94.7 64 76.6
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 8.9e-18 94.7 64 78.1
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.2e-17 94.4 63 77.8
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 1.2e-17 94.4 62 80.6
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 1.2e-17 94.4 63 79.4
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.5e-17 94.0 62 75.8
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.5e-17 94.0 63 77.8
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.5e-17 94.0 61 80.3
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 2.0e-17 93.6 64 76.6
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 2.0e-17 93.6 62 75.8
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 2.0e-17 93.6 69 75.4
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 2.0e-17 93.6 61 78.7
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 2.0e-17 93.6 62 80.6
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 2.0e-17 93.6 64 76.6
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 2.6e-17 93.2 59 83.1
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 2.6e-17 93.2 63 76.2
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.6e-17 93.2 63 77.8
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 2.6e-17 93.2 61 80.3
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.4e-17 92.8 62 77.4
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 3.4e-17 92.8 62 77.4
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 4.4e-17 92.4 64 75.0
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 4.4e-17 92.4 61 78.7
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 4.4e-17 92.4 64 73.4
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 4.4e-17 92.4 64 75.0
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 5.8e-17 92.0 62 77.4
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 5.8e-17 92.0 64 73.4
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 5.8e-17 92.0 64 73.4
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 7.5e-17 91.7 63 76.2
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 7.5e-17 91.7 62 77.4
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 7.5e-17 91.7 64 76.6
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 7.5e-17 91.7 64 73.4
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 7.5e-17 91.7 63 74.6
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 9.8e-17 91.3 59 81.4
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 9.8e-17 91.3 59 81.4
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 9.8e-17 91.3 59 81.4
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 9.8e-17 91.3 59 81.4
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 9.8e-17 91.3 61 77.0
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 1.3e-16 90.9 59 81.4
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 1.7e-16 90.5 59 79.7
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 1.7e-16 90.5 63 74.6
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 1.7e-16 90.5 62 75.8
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 2.2e-16 90.1 59 81.4
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 2.2e-16 90.1 64 71.9
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 2.9e-16 89.7 59 79.7
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 2.9e-16 89.7 61 75.4
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 4.9e-16 89.0 61 77.0
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 6.4e-16 88.6 59 79.7
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 6.4e-16 88.6 59 76.3
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 6.4e-16 88.6 62 72.6
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 8.3e-16 88.2 63 73.0
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 1.1e-15 87.8 64 76.6
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.4e-15 87.4 58 75.9
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.9e-15 87.0 61 72.1
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 2.4e-15 86.7 64 70.3
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 2.4e-15 86.7 63 71.4
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 5.4e-15 85.5 58 75.9
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 5.4e-15 85.5 61 73.8
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 7.0e-15 85.1 63 73.0
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 2.0e-14 83.6 59 74.6
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 4.6e-14 82.4 59 76.3
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 5.0e-13 79.0 54 74.1
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 6.6e-13 78.6 83 55.4
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.1e-12 77.8 52 76.9
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 4.3e-12 75.9 51 74.5
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 7.3e-12 75.1 51 72.5
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 2.1e-11 73.6 50 78.0
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 1.4e-10 70.9 52 69.2
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 4.0e-10 69.3 61 65.6
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 2.2e-08 63.5 52 63.5
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 3.7e-08 62.8 54 64.8


User provided reference genes

Program Settings