Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.8e-171 605.1 295 100.0
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.0e-144 516.9 294 83.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 6.1e-142 507.7 246 98.4
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.3e-138 494.6 295 81.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 4.1e-130 468.4 295 75.6
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 5.9e-129 464.5 292 75.3
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.5e-127 459.1 295 75.3
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.2e-127 458.4 295 76.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 9.4e-127 457.2 292 76.0
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.7e-126 455.7 295 74.2
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 6.1e-126 454.5 290 75.2
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.8e-125 453.0 292 75.3
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.8e-125 453.0 295 74.6
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.8e-125 450.7 295 74.2
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.0e-124 449.5 275 77.8
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 4.4e-124 448.4 292 72.3
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.4e-122 443.4 292 72.3
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.4e-122 443.4 295 72.9
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.0e-122 441.0 294 73.1
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 4.5e-121 438.3 290 74.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.5e-119 431.4 286 73.8
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 5.5e-119 431.4 292 71.9
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.2e-119 431.0 294 70.7
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.6e-118 429.9 292 73.6
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 6.1e-118 427.9 290 71.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 4.0e-117 425.2 285 72.6
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.6e-116 422.5 295 70.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.4e-116 422.2 292 71.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 3.7e-115 418.7 277 71.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.9e-115 418.3 292 70.2
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 6.3e-115 417.9 290 68.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.8e-114 416.4 293 68.6
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.4e-114 416.0 281 68.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 4.1e-114 415.2 289 67.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.2e-113 413.7 290 67.6
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.6e-113 413.3 290 69.0
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 3.5e-113 412.1 294 66.7
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 7.8e-113 411.0 273 70.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.3e-112 410.2 289 68.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.3e-112 409.5 295 67.1
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 8.6e-112 407.5 295 67.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.9e-111 406.4 269 71.4
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.9e-111 406.4 295 68.5
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.3e-111 405.6 290 67.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.3e-111 405.6 279 70.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 4.3e-111 405.2 277 68.6
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 9.5e-111 404.1 279 67.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.6e-110 403.3 284 69.7
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 6.1e-110 401.4 287 66.6
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.0e-109 400.6 287 66.6
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.0e-109 400.6 290 67.6
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.8e-109 399.8 281 67.6
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 5.2e-109 398.3 291 66.7
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 5.2e-109 398.3 281 67.3
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 8.9e-109 397.5 257 71.2
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.2e-108 397.1 291 68.0
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.2e-108 397.1 268 69.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.5e-108 396.7 271 73.1
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.4e-108 395.2 315 61.6
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.4e-108 395.2 274 69.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.5e-108 394.4 251 73.7
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.3e-107 393.7 289 67.8
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.3e-107 393.7 278 66.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.2e-107 392.9 281 66.9
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.7e-107 392.1 286 65.0
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 6.4e-107 391.3 269 67.7
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 6.4e-107 391.3 230 80.0
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.1e-106 390.6 288 66.3
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.9e-106 389.8 297 66.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 5.4e-106 388.3 279 65.9
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 9.2e-106 387.5 274 68.2
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 9.2e-106 387.5 270 68.1
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-105 386.7 300 62.0
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.0e-105 386.3 290 65.2
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 2.0e-105 386.3 278 65.5
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.3e-104 383.6 280 66.8
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.6e-102 375.6 281 64.4
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 3.6e-102 375.6 292 63.7
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.3e-101 372.9 268 66.4
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.9e-101 370.9 251 71.7
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.5e-100 370.2 295 62.0
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 9.8e-100 367.5 291 60.1
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.2e-97 360.5 261 65.5
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 5.1e-96 355.1 277 62.5
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 5.1e-96 355.1 281 59.8
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.1e-95 354.0 288 58.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 6.2e-94 348.2 287 60.6
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 5.2e-93 345.1 273 58.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 7.5e-92 341.3 282 58.9
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.4e-90 337.0 274 60.2
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.1e-86 323.2 239 64.4
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.2e-82 309.3 263 58.2
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.6e-80 301.6 282 53.2
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 7.3e-79 298.1 293 54.3
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 9.6e-79 297.7 296 51.7
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-77 294.3 282 51.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-77 293.5 293 50.9
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-77 293.5 287 51.9
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-77 293.5 293 50.9
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.8e-77 293.5 297 45.8
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 9.0e-77 291.2 299 50.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-76 289.3 286 50.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 4.4e-76 288.9 281 50.9
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 5.8e-76 288.5 300 50.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.8e-76 288.5 301 50.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.8e-76 288.5 274 58.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.6e-76 288.1 282 50.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-75 287.0 287 50.2
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 4.9e-75 285.4 290 50.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-74 283.1 284 50.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.6e-73 278.9 299 50.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.0e-72 277.7 280 51.1
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 5.1e-72 275.4 254 52.4
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.5e-71 273.9 252 51.6
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.1e-65 253.4 236 48.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.1e-54 216.9 254 43.7
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.4e-53 213.4 250 42.4
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.8e-51 206.1 240 44.6
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.9e-49 198.4 198 47.5
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 6.3e-46 188.7 265 38.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-42 177.9 229 41.0
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-39 167.9 282 37.9
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 242 38.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 180 47.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 183 44.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-36 157.5 178 43.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-36 156.4 201 42.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-36 156.4 202 42.1
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 7.7e-36 155.2 246 38.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 5.0e-35 152.5 201 41.8
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 5.0e-35 152.5 201 42.8
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-34 150.2 202 42.1
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.5e-34 149.1 208 43.3
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 8.8e-32 141.7 281 35.2
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.2e-30 137.1 150 43.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 3.7e-30 136.3 149 46.3
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-28 130.6 159 41.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.9e-27 126.7 149 45.6
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.7e-22 110.9 179 34.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-22 110.2 202 35.1
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-22 110.2 202 35.1
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 8.2e-22 108.6 154 40.3
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-17 94.0 62 64.5
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-17 94.0 62 64.5
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 6.1e-17 92.4 99 50.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-16 90.9 147 40.1
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 2.3e-16 90.5 95 48.4
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.2e-12 78.2 91 47.3
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 2.3e-08 63.9 116 32.8


User provided reference genes

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