Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 1.5e-25 118.6 57 100.0
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 4.1e-18 94.0 49 89.8
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.9e-15 85.1 46 87.0
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 1.6e-14 82.0 46 84.8
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 2.7e-14 81.3 46 84.8
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 3.6e-14 80.9 46 82.6
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 6.1e-14 80.1 46 84.8
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.0e-13 79.3 47 85.1
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.8e-13 78.6 46 82.6
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.8e-13 78.6 46 82.6
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 2.3e-13 78.2 47 83.0
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.0e-13 77.8 46 80.4
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 3.9e-13 77.4 46 82.6
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 5.1e-13 77.0 46 82.6
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 5.1e-13 77.0 48 77.1
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 5.1e-13 77.0 48 77.1
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 6.7e-13 76.6 46 80.4
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 8.8e-13 76.3 46 82.6
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.1e-12 75.9 43 83.7
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.5e-12 75.5 47 83.0
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.9e-12 75.1 46 78.3
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.9e-12 75.1 46 78.3
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.9e-12 75.1 46 80.4
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 2.5e-12 74.7 47 80.9
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 2.5e-12 74.7 47 80.9
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 2.5e-12 74.7 43 83.7
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 3.3e-12 74.3 47 80.9
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 3.3e-12 74.3 46 76.1
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 3.3e-12 74.3 46 80.4
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 4.3e-12 73.9 46 78.3
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 4.3e-12 73.9 46 78.3
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 4.3e-12 73.9 46 78.3
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 4.3e-12 73.9 46 78.3
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 5.7e-12 73.6 46 76.1
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 7.4e-12 73.2 52 73.1
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.3e-11 72.4 46 78.3
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 1.3e-11 72.4 46 76.1
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 1.3e-11 72.4 46 73.9
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.7e-11 72.0 46 73.9
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 2.2e-11 71.6 46 76.1
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 2.8e-11 71.2 46 76.1
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 4.8e-11 70.5 46 71.7
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 4.8e-11 70.5 42 78.6
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 4.8e-11 70.5 46 78.3
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 6.3e-11 70.1 46 80.4
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 6.3e-11 70.1 46 78.3
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.1e-10 69.3 46 78.3
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.1e-10 69.3 42 76.2
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 1.1e-10 69.3 38 84.2
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 1.1e-10 69.3 38 84.2
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.4e-10 68.9 46 76.1
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.4e-10 68.9 46 76.1
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.4e-10 68.9 47 76.6
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 1.4e-10 68.9 46 73.9
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 1.8e-10 68.6 46 69.6
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 1.8e-10 68.6 46 71.7
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.8e-10 68.6 46 76.1
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 3.1e-10 67.8 46 76.1
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 3.1e-10 67.8 46 76.1
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 3.1e-10 67.8 46 76.1
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 3.1e-10 67.8 46 76.1
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 3.1e-10 67.8 46 76.1
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 5.3e-10 67.0 45 75.6
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 5.3e-10 67.0 46 69.6
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 73.9
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 71.7
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 69.6
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 71.7
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 71.7
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 6.9e-10 66.6 46 73.9
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 6.9e-10 66.6 45 73.3
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 9.1e-10 66.2 46 65.2
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 9.1e-10 66.2 46 73.9
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 9.1e-10 66.2 46 71.7
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.2e-09 65.9 35 91.4
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.2e-09 65.9 48 72.9
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.2e-09 65.9 38 81.6
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 1.2e-09 65.9 51 68.6
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.2e-09 65.9 54 63.0
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 2.0e-09 65.1 47 74.5
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 2.0e-09 65.1 46 73.9
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 2.6e-09 64.7 44 70.5
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 2.6e-09 64.7 37 81.1
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 2.6e-09 64.7 45 73.3
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 2.6e-09 64.7 46 65.2
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 3.4e-09 64.3 46 69.6
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 3.4e-09 64.3 46 69.6
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 4.5e-09 63.9 46 67.4
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 7.7e-09 63.2 44 70.5
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 1.0e-08 62.8 47 76.6
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-08 62.4 46 71.7
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-08 62.4 46 69.6
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.7e-08 62.0 47 68.1
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 2.2e-08 61.6 39 79.5
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 2.2e-08 61.6 39 79.5
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 2.2e-08 61.6 39 79.5
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 2.2e-08 61.6 39 79.5
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 2.2e-08 61.6 46 67.4
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 2.2e-08 61.6 35 85.7
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 2.2e-08 61.6 46 69.6
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.9e-08 61.2 46 67.4
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 2.9e-08 61.2 40 75.0
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 6.5e-08 60.1 39 76.9
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 6.5e-08 60.1 39 76.9
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 6.5e-08 60.1 45 66.7
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 6.5e-08 60.1 46 65.2
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 6.5e-08 60.1 39 76.9
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 8.5e-08 59.7 39 79.5
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 8.5e-08 59.7 39 79.5
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 8.5e-08 59.7 43 67.4
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 1.1e-07 59.3 34 85.3
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.1e-07 59.3 44 61.4
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 2.5e-07 58.2 46 58.7
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 4.2e-07 57.4 35 77.1
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 4.2e-07 57.4 44 61.4
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 5.5e-07 57.0 39 74.4
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 9.4e-07 56.2 44 59.1
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 1.2e-06 55.8 36 75.0
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 1.6e-06 55.5 49 61.2
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 2.1e-06 55.1 34 76.5
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.1e-06 55.1 44 59.1
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 2.1e-06 55.1 44 59.1
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 2.1e-06 55.1 34 79.4
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.6e-06 54.3 45 64.4
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 3.6e-06 54.3 38 73.7
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 6.1e-06 53.5 44 56.8
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 7.9e-06 53.1 28 89.3
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 7.9e-06 53.1 49 63.3
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 7.9e-06 53.1 49 63.3
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 7.9e-06 53.1 49 63.3


User provided reference genes

Program Settings