Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 7.9e-174 613.6 297 100.0
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.7e-166 587.8 305 93.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 4.4e-156 554.7 305 87.5
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 7.2e-151 537.3 304 82.9
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.7e-147 525.0 301 82.1
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 8.3e-147 523.9 305 81.3
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 7.0e-146 520.8 301 80.7
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 9.1e-146 520.4 309 80.9
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 5.9e-145 517.7 305 80.3
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 5.0e-144 514.6 305 80.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.5e-143 513.1 301 80.4
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.5e-143 513.1 301 79.7
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 5.5e-143 511.1 307 79.5
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 7.2e-143 510.8 297 78.8
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-142 510.0 300 79.0
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.6e-142 509.6 301 79.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 6.1e-142 507.7 305 80.0
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.0e-142 507.3 301 79.4
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.3e-141 505.8 301 78.7
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 4.0e-141 505.0 301 78.7
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 5.2e-141 504.6 301 78.7
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.8e-141 504.2 301 78.7
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.5e-140 503.1 301 79.4
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 3.4e-140 501.9 300 78.0
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 9.8e-140 500.4 305 77.7
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.7e-139 499.6 301 77.7
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.8e-139 498.8 301 77.4
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 3.7e-139 498.4 305 78.4
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.9e-139 498.0 300 78.3
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.4e-138 495.7 301 77.7
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.4e-138 495.7 304 77.6
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 5.4e-138 494.6 305 77.7
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 7.0e-138 494.2 298 78.5
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.7e-137 492.3 303 75.2
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.7e-136 489.6 303 74.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 2.9e-136 488.8 301 76.1
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.9e-135 486.1 300 75.0
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 3.3e-135 485.3 303 74.9
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 5.6e-135 484.6 305 74.4
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 5.6e-135 484.6 301 76.7
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 7.3e-135 484.2 302 73.5
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 7.3e-135 484.2 303 73.3
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.6e-134 483.0 301 76.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.6e-134 483.0 301 76.1
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.1e-134 482.6 304 77.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 6.1e-134 481.1 308 72.7
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 8.0e-134 480.7 304 74.7
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 1.0e-133 480.3 307 74.9
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.3e-133 479.2 304 76.3
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.3e-133 479.2 305 73.4
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 2.3e-133 479.2 308 73.7
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.9e-133 477.2 305 72.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 8.9e-133 477.2 300 75.3
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 7.5e-132 474.2 309 71.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 7.5e-132 474.2 341 69.2
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.5e-132 474.2 300 73.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.8e-132 473.8 314 73.9
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.7e-131 473.0 303 71.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.9e-131 472.2 303 71.9
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.7e-131 471.9 301 73.1
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 3.7e-131 471.9 300 73.3
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 4.9e-131 471.5 302 71.5
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 6.4e-131 471.1 309 71.2
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 6.4e-131 471.1 307 71.7
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 8.3e-131 470.7 301 74.1
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.1e-130 470.3 302 71.5
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 3.2e-130 468.8 308 71.4
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.2e-130 468.8 307 71.3
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.2e-130 468.8 300 73.3
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.2e-130 468.8 300 73.0
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 5.4e-130 468.0 301 71.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 9.2e-130 467.2 303 71.0
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.6e-129 466.5 310 71.6
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.6e-129 466.5 300 72.7
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.0e-129 466.1 309 70.6
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.7e-129 465.7 375 61.6
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.3e-128 463.4 302 69.9
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.7e-128 463.0 303 70.3
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.7e-128 463.0 306 71.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 3.0e-128 462.2 301 71.4
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 3.9e-128 461.8 301 70.8
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 5.0e-128 461.5 314 70.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-127 460.3 301 70.1
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.5e-127 459.1 329 67.2
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.5e-127 459.1 308 69.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.5e-127 459.1 303 69.3
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 4.3e-127 458.4 301 72.1
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.3e-127 458.4 304 70.4
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 7.3e-127 457.6 301 69.4
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 7.3e-127 457.6 302 69.5
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 7.3e-127 457.6 371 61.7
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.7e-126 454.9 304 70.1
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 2.3e-125 452.6 304 69.7
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 3.1e-125 452.2 301 71.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 2.0e-124 449.5 298 68.8
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 5.8e-124 448.0 301 71.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.2e-123 446.0 303 66.3
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 6.4e-123 444.5 301 71.1
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 8.3e-123 444.1 314 67.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.3e-123 444.1 305 71.8
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.6e-118 428.7 267 76.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 4.4e-116 421.8 297 65.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.7e-113 412.5 303 67.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 7.8e-113 411.0 297 64.0
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.0e-109 398.7 238 76.5
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 8.9e-109 397.5 253 74.3
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.4e-108 395.6 265 68.7
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.1e-103 380.6 258 69.8
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 5.4e-98 361.7 201 84.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 3.0e-96 355.9 216 74.5
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 5.6e-95 351.7 298 53.7
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 9.3e-90 334.3 302 55.3
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 1.0e-88 330.9 260 63.1
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 2.8e-86 322.8 296 52.7
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.4e-85 319.7 291 53.6
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.6e-84 314.7 177 80.8
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.3e-83 313.9 177 80.2
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-80 303.9 302 52.3
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 8.7e-80 301.2 210 66.7
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 4.2e-74 282.3 179 76.0
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-71 274.2 181 75.7
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.8e-69 266.9 237 53.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 6.5e-67 258.5 143 83.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 6.3e-54 215.3 170 57.6
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.6e-49 199.5 130 71.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.4e-48 197.6 182 53.8
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.0e-47 193.7 107 84.1
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.9e-42 177.2 138 63.8
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 2.5e-42 176.8 130 67.7
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 7.2e-42 175.3 124 63.7
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.4e-40 171.0 145 60.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 5.2e-32 142.5 108 65.7
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.1e-29 134.8 120 56.7
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-28 131.3 128 51.6
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-27 127.9 128 51.6
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-18 98.2 52 82.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.7e-12 77.0 77 48.1


User provided reference genes

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