Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.5e-124 449.5 224 100.0
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 6.7e-117 424.1 224 94.6
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 9.4e-103 377.1 323 64.4
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.1e-98 363.6 224 79.9
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.6e-97 359.8 224 77.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.9e-96 355.5 224 76.3
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 3.0e-93 345.5 224 74.1
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.0e-93 345.1 224 74.6
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 4.0e-93 345.1 224 74.1
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 5.2e-93 344.7 224 74.6
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.8e-93 344.0 224 74.6
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 8.8e-93 344.0 224 74.6
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 8.8e-93 344.0 222 74.3
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 3.4e-92 342.0 224 73.7
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 8.3e-91 337.4 228 75.0
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 3.1e-90 335.5 224 71.9
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 2.0e-89 332.8 222 71.2
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.5e-89 332.0 224 71.4
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 4.5e-89 331.6 225 71.6
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.3e-88 330.1 224 71.4
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.7e-88 329.7 224 71.9
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.3e-88 329.3 224 71.0
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 2.3e-88 329.3 225 71.6
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 3.8e-88 328.6 224 69.6
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.8e-88 328.6 224 69.6
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.9e-87 326.2 224 67.9
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.9e-87 326.2 225 70.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 2.5e-87 325.9 220 70.5
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.3e-87 325.5 224 67.9
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.3e-87 325.5 224 71.0
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 3.3e-87 325.5 224 68.3
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 4.3e-87 325.1 224 70.1
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 4.3e-87 325.1 224 69.6
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.3e-87 325.1 224 69.6
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.2e-86 323.6 224 69.2
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.2e-86 323.6 224 69.6
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.2e-86 323.6 218 70.2
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 2.1e-86 322.8 218 69.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.8e-86 322.4 224 71.0
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 6.1e-86 321.2 224 69.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 8.0e-86 320.9 224 68.3
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.0e-85 320.5 225 68.4
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.3e-85 319.3 229 67.7
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.3e-85 319.3 222 68.9
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.3e-85 319.3 230 68.7
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.2e-84 317.0 225 68.0
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 2.6e-84 315.8 231 64.5
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.4e-84 315.5 218 71.1
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.4e-84 315.5 224 67.9
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 5.7e-84 314.7 233 66.5
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.7e-84 314.7 233 66.5
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 5.7e-84 314.7 233 66.1
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.5e-84 314.3 233 66.1
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 9.8e-84 313.9 226 66.8
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 9.8e-84 313.9 224 68.3
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.7e-83 313.2 230 67.4
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.2e-83 312.8 233 66.5
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.2e-83 312.8 224 69.2
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.9e-83 312.4 218 68.8
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 3.7e-83 312.0 222 68.0
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 6.4e-83 311.2 223 66.4
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 6.4e-83 311.2 229 66.8
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 6.4e-83 311.2 229 66.8
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 6.4e-83 311.2 224 66.1
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.4e-83 311.2 226 69.0
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.1e-82 310.5 224 67.0
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.4e-82 309.3 222 67.1
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 3.2e-82 308.9 230 66.1
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 4.1e-82 308.5 222 66.7
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 4.1e-82 308.5 223 66.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 7.0e-82 307.8 224 67.9
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.2e-82 307.4 233 64.8
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 9.2e-82 307.4 224 67.4
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.2e-81 307.0 222 66.7
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.6e-81 306.6 224 66.5
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 2.0e-81 306.2 225 65.8
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.9e-81 304.7 229 65.5
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.9e-81 304.7 229 65.5
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.9e-81 304.7 229 65.5
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.9e-81 304.7 218 68.3
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.9e-81 304.7 218 68.3
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.7e-80 303.1 225 67.1
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.3e-80 302.8 224 67.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.3e-80 302.8 224 66.5
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 3.9e-80 302.0 222 66.2
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 3.9e-80 302.0 218 67.0
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 8.6e-80 300.8 235 63.8
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 8.6e-80 300.8 251 60.6
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.1e-79 300.4 226 66.8
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.9e-79 299.7 218 66.5
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.9e-79 299.7 226 65.0
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 5.6e-79 298.1 224 63.8
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 2.1e-78 296.2 221 63.8
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 8.0e-78 294.3 224 63.8
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.8e-77 293.1 224 63.8
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.2e-76 290.4 184 74.5
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.2e-75 286.2 221 64.7
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.1e-74 283.9 217 62.2
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 4.1e-74 282.0 218 61.9
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 8.1e-70 267.7 220 57.7
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.4e-69 266.9 224 58.5
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.9e-66 256.5 207 55.6
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.9e-64 248.8 177 68.9
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 6.6e-64 248.1 209 54.1
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.9e-63 246.5 421 37.3
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 2.0e-60 236.5 208 55.8
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 4.4e-52 208.8 162 64.8
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 6.4e-51 204.9 207 48.8
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.7e-48 196.8 209 49.3
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.9e-48 195.7 125 76.0
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 3.5e-41 172.6 117 68.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 4.6e-41 172.2 115 75.7
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-40 170.6 124 65.3
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 3.9e-40 169.1 116 75.9
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.1e-34 151.0 106 68.9
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.2e-34 149.1 102 68.6
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.2e-33 147.5 99 70.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 3.0e-32 142.9 134 53.7
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.3e-27 127.5 99 59.6
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.5e-23 114.0 83 63.9
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.4e-21 107.5 229 29.7
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.3e-15 85.9 100 51.0
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.6e-14 84.0 67 61.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.6e-14 84.0 67 61.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 3.9e-08 62.8 86 41.9


User provided reference genes

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