Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 2.0e-192 675.6 351 100.0
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.1e-161 573.5 351 84.9
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.4e-156 556.6 353 81.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.9e-143 512.3 354 76.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.4e-140 503.4 353 76.2
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.2e-139 500.4 353 73.9
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.4e-139 498.8 352 77.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 8.3e-138 494.2 347 75.5
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.7e-136 489.2 347 74.4
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.7e-136 489.2 347 74.4
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 5.9e-136 488.0 352 74.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.0e-135 487.3 354 72.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.7e-135 486.5 354 73.7
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.3e-135 486.1 357 74.2
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.9e-134 483.0 339 76.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.5e-134 482.6 355 73.2
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 2.5e-134 482.6 353 74.2
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.3e-134 482.3 352 72.7
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.3e-134 482.3 353 74.5
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 9.5e-134 480.7 346 73.4
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 9.5e-134 480.7 354 72.9
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 6.1e-133 478.0 354 73.2
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 8.0e-133 477.6 304 84.5
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 2.3e-132 476.1 355 74.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 3.1e-132 475.7 353 72.2
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 5.2e-132 474.9 351 73.2
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.5e-131 473.4 352 72.7
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-131 473.0 353 72.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.7e-130 468.8 360 70.8
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 4.9e-130 468.4 337 73.6
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.1e-129 467.2 360 70.8
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.4e-129 464.9 351 72.1
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.6e-128 463.4 352 71.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.7e-128 462.6 301 79.4
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 3.5e-128 462.2 339 71.4
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 2.3e-127 459.5 355 71.0
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.9e-127 458.8 333 73.3
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-126 456.8 373 68.6
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 5.6e-126 454.9 349 69.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 5.6e-126 454.9 351 69.5
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.2e-125 453.8 348 70.4
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.6e-125 453.4 349 71.1
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 2.8e-125 452.6 348 70.7
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 8.0e-125 451.1 322 72.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 8.0e-125 451.1 350 69.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.1e-124 450.7 351 70.9
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.4e-124 450.3 450 58.7
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 2.3e-124 449.5 354 70.1
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 6.8e-124 448.0 351 70.7
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.0e-123 446.4 352 69.9
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 4.4e-123 445.3 347 68.6
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 7.5e-123 444.5 323 72.4
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 7.5e-123 444.5 346 68.5
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 9.8e-123 444.1 352 70.5
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 3.7e-122 442.2 350 69.7
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.4e-122 441.4 299 74.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.1e-121 440.7 355 66.8
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.2e-121 439.1 346 66.8
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 5.4e-121 438.3 352 68.5
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.2e-120 437.2 351 69.2
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.6e-120 436.8 354 67.2
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.6e-120 436.8 356 68.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 3.5e-120 435.6 347 67.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.3e-119 433.7 300 74.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 6.6e-119 431.4 346 67.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 8.6e-119 431.0 346 67.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 8.6e-119 431.0 346 67.3
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.5e-118 430.3 389 63.0
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.9e-118 429.9 323 68.1
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 4.3e-118 428.7 342 68.4
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.3e-118 428.7 348 67.2
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.3e-118 428.7 348 67.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 7.3e-118 427.9 345 67.8
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 8.1e-117 424.5 350 68.0
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.4e-116 423.7 346 66.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.4e-116 423.7 335 68.1
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 4.0e-116 422.2 255 82.7
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 4.0e-116 422.2 346 67.3
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 5.8e-115 418.3 258 80.6
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 9.9e-115 417.5 302 72.2
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.9e-113 413.3 354 65.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 2.4e-113 412.9 345 65.5
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.2e-112 410.6 353 66.3
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 2.7e-112 409.5 352 64.8
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.7e-112 409.5 351 64.7
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 2.7e-112 409.5 334 66.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.6e-111 404.4 296 69.6
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 4.3e-110 402.1 300 70.0
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.6e-109 399.1 318 67.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 3.1e-108 396.0 228 84.2
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 6.8e-108 394.8 352 62.8
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 7.1e-105 384.8 356 63.2
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 2.0e-91 340.1 326 60.4
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 8.4e-90 334.7 350 53.7
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 2.4e-84 316.6 360 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 6.0e-80 302.0 292 53.4
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.5e-78 296.6 255 60.0
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-76 289.3 164 85.4
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.3e-76 288.9 173 80.3
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.8e-71 273.9 371 45.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 8.7e-71 271.6 347 45.2
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-70 270.0 187 70.6
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.8e-66 256.1 144 84.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 6.3e-61 238.8 219 51.6
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-53 214.5 132 81.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-52 211.1 126 81.7
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-52 211.1 126 81.7
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.2e-50 203.8 196 58.7
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 7.2e-49 198.7 132 75.0
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 7.7e-43 178.7 334 34.1
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.6e-40 171.0 160 66.2
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 4.1e-36 156.4 327 32.4
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.4e-31 141.4 107 71.0
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.4e-31 141.4 238 37.0
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 6.6e-26 122.5 201 42.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.5e-25 120.6 83 71.1
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 8.3e-21 105.5 92 59.8
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-20 105.1 54 87.0
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-16 90.1 129 43.4
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.4e-15 88.2 65 61.5
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-14 85.1 129 41.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 6.4e-13 79.3 138 43.5
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 8.6e-10 68.9 38 86.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 9.5e-09 65.5 77 48.1
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 9.5e-09 65.5 77 48.1
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.6e-06 57.4 267 25.1


User provided reference genes

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