Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 0.0e+00 2015.4 1039 100.0
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 0.0e+00 1852.0 1040 93.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 0.0e+00 1208.0 1062 65.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 4.9e-263 911.8 833 62.5
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.1e-189 667.2 1172 40.2
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.9e-174 617.5 1103 40.3
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 5.6e-174 615.9 1084 40.6
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.2e-173 614.8 992 42.1
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 3.1e-172 610.1 1089 40.6
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-171 607.8 1099 39.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 5.8e-171 605.9 1082 40.7
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.4e-170 602.4 1103 39.8
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.0e-167 595.1 1123 39.5
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 3.3e-166 590.1 1089 40.8
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.1e-165 587.4 1113 40.9
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-163 581.3 1114 38.3
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 9.9e-163 578.6 1107 40.1
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 2.2e-162 577.4 1083 38.7
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.8e-162 576.6 1123 40.2
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 4.6e-160 569.7 1087 39.7
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.7e-159 567.8 1077 39.6
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.7e-159 565.5 1063 39.9
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 9.0e-156 555.4 1092 38.0
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 9.3e-153 545.4 1062 39.0
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.6e-152 543.1 1071 37.8
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.9e-152 542.3 1074 38.2
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 1.3e-149 535.0 1060 38.5
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.1e-148 531.9 1079 37.7
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.8e-148 531.2 1050 39.2
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.4e-148 530.8 1064 37.7
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.2e-147 528.5 1085 38.2
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 6.4e-146 522.7 1075 38.5
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 3.2e-145 520.4 1077 38.2
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 4.2e-145 520.0 637 48.5
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 9.3e-145 518.8 1069 38.2
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.1e-140 505.4 1096 37.2
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.2e-139 501.9 1058 36.4
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.0e-138 498.8 1107 36.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.1e-137 495.4 1087 37.5
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 1.1e-137 495.4 1040 36.2
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 2.5e-137 494.2 1157 34.5
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 2.3e-135 487.6 795 42.1
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.9e-134 484.6 1070 34.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 3.3e-134 483.8 1094 35.6
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 1.3e-133 481.9 1060 36.5
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 4.5e-131 473.4 1098 34.4
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.6e-128 464.9 922 38.8
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 6.3e-125 453.0 1077 34.4
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 6.9e-124 449.5 561 53.8
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.0e-122 445.7 1091 34.6
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 5.0e-122 443.4 1041 34.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.1e-121 442.2 1088 34.5
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 2.1e-120 438.0 1051 36.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 7.9e-120 436.0 1048 34.6
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 1.1e-118 432.2 1066 34.4
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 9.4e-113 412.5 1124 32.7
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 1.2e-112 412.1 1074 31.1
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 4.7e-112 410.2 1138 32.6
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 6.1e-112 409.8 1125 32.1
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.0e-111 409.1 1074 32.2
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.0e-111 407.5 589 44.3
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.1e-110 405.6 1120 33.0
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.0e-110 404.8 1097 31.9
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 3.3e-110 404.1 1058 32.1
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 9.7e-110 402.5 1060 32.1
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 9.7e-110 402.5 1103 31.9
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 4.8e-109 400.2 625 40.2
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.2e-105 387.5 602 39.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 7.2e-105 386.3 1040 32.1
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 3.7e-101 374.0 1075 31.3
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.1e-100 372.5 639 38.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.4e-100 372.1 1051 32.4
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.2e-99 369.0 747 36.5
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 4.5e-99 367.1 567 40.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 3.6e-96 357.5 696 36.5
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.6e-96 357.5 591 37.9
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.0e-94 351.7 983 30.7
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 4.8e-93 347.1 1220 30.3
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.4e-92 345.5 1059 29.7
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.0e-92 343.2 516 42.8
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.1e-88 331.6 1057 30.5
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 3.7e-85 320.9 1060 29.7
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 6.3e-85 320.1 1170 30.3
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.7e-83 314.7 1060 29.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.7e-77 295.4 684 34.5
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 6.4e-77 293.5 684 34.4
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 8.3e-77 293.1 753 31.7
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.1e-76 292.7 682 34.2
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 3.2e-76 291.2 1087 28.1
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.0e-75 288.5 1072 29.9
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.3e-74 285.8 1093 28.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 5.6e-73 280.4 695 33.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.1e-71 276.2 677 33.8
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 4.0e-71 274.2 952 29.4
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 8.9e-71 273.1 1059 27.7
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 3.4e-70 271.2 1242 26.6
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.1e-68 264.2 1233 27.0
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 7.0e-68 263.5 951 28.5
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.2e-64 252.7 376 39.1
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 5.8e-62 243.8 184 63.0
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 5.4e-60 237.3 773 30.9
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.8e-55 222.2 394 35.0
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 6.9e-47 193.7 177 55.9
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.2e-46 193.0 460 30.7
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 9.9e-46 189.9 558 28.0
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.1e-44 186.4 232 47.4
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 6.2e-40 170.6 299 39.5
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 1.7e-37 162.5 811 26.6
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.9e-34 151.4 287 32.8
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.7e-32 144.8 378 29.4
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 4.0e-31 141.4 322 29.5
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 5.3e-31 141.0 376 28.7
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 9.0e-31 140.2 92 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.8e-29 134.8 411 26.5
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.4e-28 132.1 262 34.0
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.1e-20 104.0 128 48.4
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 1.3e-13 83.2 165 38.2
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.9e-12 79.3 379 25.6
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.2e-12 77.4 99 43.4
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 9.7e-09 67.0 166 36.1
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 1.5e-06 59.7 170 34.7


User provided reference genes

Program Settings