Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.3e-212 741.5 388 100.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 5.1e-205 717.6 388 97.4
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.0e-189 665.2 388 89.2
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.8e-187 657.9 387 88.1
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.1e-178 628.6 388 82.7
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 9.1e-178 627.1 388 82.7
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 9.4e-175 617.1 388 82.2
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.7e-174 615.5 386 81.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.0e-173 612.1 388 80.4
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.0e-173 612.1 388 80.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.6e-172 609.0 388 80.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 4.4e-172 608.2 388 80.2
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.4e-172 607.4 388 80.4
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 4.8e-171 604.7 388 79.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 6.3e-171 604.4 387 80.9
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.2e-171 604.0 388 80.2
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.1e-170 603.6 388 79.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.2e-169 600.1 388 79.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.0e-169 599.4 388 78.1
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.6e-169 599.0 389 80.2
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.7e-168 596.3 386 79.0
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 3.8e-168 595.1 388 78.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 8.5e-168 594.0 388 78.6
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.9e-167 592.8 385 79.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.2e-167 592.0 388 78.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 3.2e-167 592.0 385 78.4
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.2e-167 592.0 385 78.4
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.2e-167 591.7 383 78.9
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.5e-167 591.3 386 78.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.5e-167 591.3 388 78.9
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.2e-166 590.1 388 77.1
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 6.1e-166 587.8 389 78.4
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.1e-166 587.8 388 78.6
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.8e-165 586.3 388 79.1
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 3.0e-165 585.5 389 78.4
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.8e-165 583.9 388 77.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.1e-164 583.6 385 77.4
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.0e-164 582.8 388 77.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 9.7e-164 580.5 393 77.9
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.7e-163 579.7 406 74.9
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-162 576.2 388 76.3
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 7.0e-162 574.3 388 77.1
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 9.1e-162 573.9 389 76.6
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.6e-161 573.2 389 76.9
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.6e-161 572.4 388 76.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 5.9e-161 571.2 386 75.9
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 7.7e-161 570.9 377 77.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 7.7e-161 570.9 384 75.8
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.0e-160 570.5 388 75.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.2e-160 569.3 388 75.3
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.1e-159 567.0 383 75.7
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.9e-159 566.2 387 74.7
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 4.2e-159 565.1 390 75.9
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.2e-159 565.1 388 76.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 5.5e-159 564.7 386 74.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.2e-158 563.5 390 75.6
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 75.8
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.1e-158 561.2 388 76.0
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.0e-157 558.9 387 74.9
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 8.8e-157 557.4 386 74.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.5e-156 556.6 388 72.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.6e-156 555.8 383 74.7
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.7e-156 554.7 383 73.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-155 552.0 388 74.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-155 552.0 388 74.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.3e-155 551.2 414 71.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.1e-154 550.4 388 75.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.4e-154 550.1 387 73.6
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.8e-154 549.7 349 79.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.1e-154 548.5 383 74.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 4.1e-154 548.5 388 74.2
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.1e-154 548.5 420 70.2
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.3e-154 548.1 388 73.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.0e-153 546.2 350 80.3
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-153 545.8 420 70.2
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.0e-152 543.9 388 73.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.9e-152 542.3 420 70.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.0e-152 541.6 420 70.0
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.5e-151 540.0 395 71.9
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 7.2e-151 537.7 389 71.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 6.8e-149 531.2 348 79.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.2e-148 530.4 392 70.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.7e-147 525.4 386 70.5
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 3.7e-147 525.4 385 71.7
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.8e-147 525.0 385 70.9
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.8e-147 525.0 385 70.6
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.8e-147 525.0 388 68.8
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.1e-146 523.9 385 72.7
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-146 523.5 385 70.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.4e-146 523.5 386 71.5
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.8e-146 523.1 386 70.5
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 3.1e-146 522.3 386 70.5
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.1e-146 521.9 385 70.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.0e-145 519.6 388 69.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.5e-145 518.5 386 69.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 3.8e-144 515.4 385 69.9
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 3.8e-144 515.4 385 69.9
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 5.0e-144 515.0 348 76.7
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 6.6e-144 514.6 386 67.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.5e-143 513.5 388 68.3
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.3e-143 512.3 385 70.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-142 510.4 388 68.6
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-142 510.4 388 68.6
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.6e-142 508.8 385 70.1
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.1e-142 508.1 388 68.6
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.0e-141 505.4 385 69.9
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.4e-140 501.9 341 77.1
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.0e-137 493.0 386 67.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.7e-137 492.7 347 73.2
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.6e-132 476.1 386 66.3
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 7.5e-132 474.6 390 66.7
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 9.8e-132 474.2 383 67.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-127 460.3 388 64.7
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.3e-127 459.1 400 61.5
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 4.0e-125 452.2 398 62.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.4e-122 443.7 394 60.9
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.4e-122 443.7 389 61.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 9.2e-122 441.0 392 60.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.3e-119 431.4 399 58.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.6e-118 429.1 388 60.6
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.4e-117 427.2 377 60.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.3e-111 406.0 388 58.8
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.5e-108 397.1 297 66.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 9.0e-101 371.3 271 71.2
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.6e-96 355.1 414 50.0
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 8.7e-88 328.2 439 44.6
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.6e-87 324.7 226 73.5
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 2.0e-84 317.0 299 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.5e-82 308.9 364 49.5
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.8e-80 303.9 265 60.0
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.0e-76 290.4 387 44.4
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.2e-60 238.0 152 86.8
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.2e-59 233.8 464 36.4
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.0e-56 224.9 164 70.7
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.1e-53 213.0 243 48.6
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.1e-53 211.8 168 67.9
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-45 188.0 128 76.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-43 181.8 173 60.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.1e-37 159.8 395 30.6
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-34 151.8 89 87.6
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 7.2e-34 149.1 149 58.4
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 8.8e-32 142.1 155 56.1
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 6.3e-30 136.0 138 60.1
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.6e-28 131.3 108 63.9
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.6e-28 131.3 166 46.4
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-27 128.6 79 81.0
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-26 124.0 120 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.1e-25 120.9 213 39.0
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-24 117.5 83 69.9
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-22 110.2 82 68.3
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-20 104.0 127 53.5
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-19 102.1 127 53.5
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-18 98.2 99 54.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-17 95.1 123 52.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 3.7e-14 83.6 109 41.3
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.4e-13 81.6 106 46.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 9.2e-13 79.0 52 69.2
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.0e-12 77.8 100 49.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.0e-12 77.8 44 88.6
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.3e-11 74.3 51 64.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 2.3e-11 74.3 94 46.8
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 6.6e-11 72.8 42 83.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-07 61.6 36 86.1
Medtr2g030260 Medicago truncatula HOM05D004239 ORTHO05D005191 4.4e-07 60.1 42 76.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.2e-06 57.8 38 73.7
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 8.3e-06 55.8 38 71.1
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 8.3e-06 55.8 83 42.2


User provided reference genes

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