Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 1.5e-159 566.2 298 100.0
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 1.8e-146 522.7 298 94.0
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 1.6e-134 483.0 298 84.6
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 1.4e-133 479.9 297 85.5
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 7.3e-127 457.6 298 81.9
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 2.1e-126 456.1 298 80.5
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.4e-125 453.4 298 81.9
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 3.1e-125 452.2 299 80.9
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 8.9e-125 450.7 298 80.2
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 8.9e-125 450.7 298 81.5
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 1.2e-124 450.3 300 81.7
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 1.7e-123 446.4 300 79.3
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 1.7e-123 446.4 298 80.9
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 2.9e-123 445.7 298 77.5
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.7e-123 445.3 300 79.0
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.7e-123 445.3 300 79.0
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 4.9e-123 444.9 300 78.7
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 4.9e-123 444.9 298 79.9
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.9e-123 444.9 300 79.0
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 4.9e-123 444.9 299 80.6
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 8.4e-123 444.1 298 79.5
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 8.4e-123 444.1 300 79.0
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.1e-122 443.7 300 79.0
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 2.4e-122 442.6 300 80.0
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.2e-122 442.2 300 78.7
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 4.1e-122 441.8 298 78.5
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 3.5e-121 438.7 300 79.3
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 1.7e-120 436.4 298 77.2
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 2.3e-120 436.0 302 78.1
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 3.9e-120 435.3 299 76.9
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 5.1e-120 434.9 298 76.5
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 6.6e-120 434.5 300 78.3
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 8.6e-120 434.1 300 76.7
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 8.6e-120 434.1 299 78.3
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 1.1e-119 433.7 313 75.4
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 1.9e-119 433.0 300 79.0
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 2.5e-119 432.6 298 78.5
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 2.5e-119 432.6 298 77.5
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 4.3e-119 431.8 301 77.7
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 9.6e-119 430.6 301 77.7
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 9.6e-119 430.6 298 76.8
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 1.2e-118 430.3 300 77.0
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 2.1e-118 429.5 300 77.7
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 6.2e-118 427.9 299 76.6
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 8.1e-118 427.6 299 76.9
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 1.4e-117 426.8 299 78.3
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 6.8e-117 424.5 299 75.9
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 1.2e-116 423.7 300 77.3
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.5e-116 423.3 295 77.3
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 1.5e-116 423.3 299 76.9
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 2.0e-116 422.9 309 76.4
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 2.0e-116 422.9 300 77.3
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 4.4e-116 421.8 300 76.7
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 7.6e-116 421.0 298 75.2
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 3.8e-115 418.7 295 75.3
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 2.4e-114 416.0 298 75.5
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 2.4e-114 416.0 299 74.9
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 3.2e-114 415.6 298 75.8
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 4.2e-114 415.2 298 74.8
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 5.4e-114 414.8 298 75.5
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 9.3e-114 414.1 304 72.7
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.6e-113 413.3 300 75.0
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 1.6e-113 413.3 298 75.2
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.6e-113 413.3 299 73.9
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 2.7e-113 412.5 305 76.7
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 3.5e-113 412.1 304 73.7
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 3.5e-113 412.1 298 74.8
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 1.3e-112 410.2 300 75.7
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 1.7e-112 409.8 298 72.8
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 3.9e-112 408.7 299 74.6
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.9e-111 406.4 301 72.4
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 1.9e-111 406.4 298 74.5
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.9e-111 406.4 303 73.6
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 1.9e-111 406.4 299 74.2
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 1.6e-110 403.3 299 72.9
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 1.6e-110 403.3 299 72.9
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 1.6e-110 403.3 299 72.9
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 1.6e-110 403.3 298 73.2
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 2.8e-110 402.5 298 72.1
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 3.6e-110 402.1 298 71.1
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 1.1e-109 400.6 300 72.0
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 1.4e-109 400.2 298 71.5
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 1.4e-109 400.2 299 73.6
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 1.4e-109 400.2 299 73.6
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 3.1e-109 399.1 298 72.1
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 3.1e-109 399.1 298 71.8
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 4.0e-109 398.7 298 72.5
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 1.2e-108 397.1 300 72.0
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 1.7e-107 393.3 298 71.8
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 2.9e-107 392.5 300 72.0
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 3.8e-107 392.1 300 71.7
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 4.9e-107 391.7 241 84.6
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 4.9e-107 391.7 298 70.5
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.2e-105 387.1 229 85.2
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 4.6e-105 385.2 304 70.1
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 1.9e-103 379.8 300 68.7
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 1.6e-102 376.7 236 79.7
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 2.1e-102 376.3 259 76.8
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.6e-102 375.6 300 69.0
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 6.2e-102 374.8 299 68.9
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 2.4e-98 362.8 281 71.5
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 4.2e-98 362.1 302 68.2
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 8.7e-96 354.4 234 78.2
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 1.1e-95 354.0 303 66.3
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 2.2e-91 339.7 220 79.1
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-90 335.9 230 74.8
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 6.7e-88 328.2 291 62.9
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.1e-87 327.4 295 61.7
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 4.3e-87 325.5 205 79.5
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 1.4e-85 320.5 275 62.9
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 5.1e-80 302.0 236 65.7
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 6.3e-78 295.0 215 76.3
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 2.4e-77 293.1 229 65.9
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 1.3e-70 270.8 226 61.1
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 6.9e-69 265.0 203 63.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 5.3e-61 238.8 137 83.9
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 5.3e-61 238.8 145 82.1
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 3.0e-48 196.4 225 44.0
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 1.4e-45 187.6 205 46.3
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.3e-38 164.5 222 40.5
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.0e-35 154.8 86 89.5
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 8.6e-35 151.8 89 88.8
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 1.8e-32 144.1 83 86.7
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 1.0e-27 128.3 64 98.4
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 6.2e-09 65.9 89 52.8


User provided reference genes

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