Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 2.2e-171 605.5 305 100.0
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.7e-139 499.6 332 77.7
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.5e-138 495.7 305 83.6
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 2.4e-133 479.2 299 83.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.8e-125 453.0 296 75.7
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.9e-122 443.0 300 74.7
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 6.1e-121 438.0 299 74.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.0e-120 437.2 297 75.1
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.3e-118 430.3 298 73.8
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 8.3e-118 427.6 301 71.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 2.0e-116 422.9 305 72.8
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 3.5e-116 422.2 299 71.2
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 8.6e-115 417.5 298 70.5
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.9e-114 416.4 298 71.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.5e-114 416.0 298 71.5
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.8e-113 412.5 299 70.6
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.8e-113 412.5 303 68.6
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 6.1e-113 411.4 298 70.5
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 8.0e-113 411.0 299 71.6
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-112 410.6 299 69.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.8e-112 407.9 299 68.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.9e-112 407.5 313 66.8
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.9e-112 407.5 313 66.1
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.2e-111 407.1 295 71.2
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.6e-111 406.0 367 59.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.4e-111 405.2 318 66.4
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 7.0e-109 397.9 299 67.6
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.2e-108 397.1 298 68.5
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.6e-108 396.7 297 69.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 4.6e-108 395.2 299 69.6
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 5.9e-108 394.8 298 68.8
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.3e-107 393.7 297 69.0
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.3e-107 393.7 297 69.0
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.3e-107 393.7 303 67.0
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 3.0e-107 392.5 303 67.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.9e-107 392.1 228 82.9
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.5e-106 389.4 302 66.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 5.6e-106 388.3 288 71.2
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.2e-105 387.1 256 73.8
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 8.0e-105 384.4 297 68.7
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.4e-104 383.6 302 66.9
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.4e-104 383.6 301 63.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 4.0e-104 382.1 319 63.0
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.2e-103 380.6 314 63.7
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.4e-103 379.0 319 62.4
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 4.4e-103 378.6 312 63.8
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 4.4e-103 378.6 321 62.3
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 5.8e-103 378.3 314 63.7
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 7.5e-103 377.9 249 75.1
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 7.5e-103 377.9 304 64.8
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 9.8e-103 377.5 314 63.1
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.7e-102 376.7 316 61.7
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.7e-102 376.7 314 63.1
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.9e-102 375.2 329 61.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-101 374.0 312 62.5
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 2.4e-101 372.9 327 62.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 2.4e-101 372.9 329 60.8
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 2.4e-101 372.9 298 64.8
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-101 372.1 334 60.2
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 7.0e-101 371.3 233 79.4
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 7.0e-101 371.3 313 61.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.6e-100 370.2 237 78.1
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 3.9e-99 365.5 299 63.9
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.1e-98 364.0 260 70.0
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.1e-98 364.0 295 64.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.6e-97 360.1 300 63.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 6.2e-97 358.2 275 69.1
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.8e-96 356.7 300 62.7
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.5e-95 353.6 216 77.8
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.0e-95 353.2 303 60.7
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 9.8e-95 350.9 270 70.0
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.7e-94 349.0 313 61.0
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 8.3e-94 347.8 253 71.1
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.9e-91 339.0 240 69.6
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 9.5e-90 334.3 273 65.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 2.1e-89 333.2 195 81.5
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 4.7e-89 332.0 203 74.9
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 4.7e-89 332.0 252 70.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 6.2e-89 331.6 299 61.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 6.8e-88 328.2 216 75.9
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.4e-87 325.9 259 60.6
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 4.4e-87 325.5 283 64.0
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 7.6e-87 324.7 306 60.5
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 6.6e-83 311.6 205 71.2
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.9e-82 310.1 307 55.7
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.8e-80 303.5 180 82.2
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.7e-78 297.0 268 61.6
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 3.6e-73 279.3 459 41.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.6e-73 279.3 230 64.8
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 4.2e-69 265.8 255 58.4
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.8e-67 260.4 173 72.8
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.9e-62 243.0 270 51.5
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 5.5e-61 238.8 181 67.4
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.6e-60 235.7 236 55.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 2.1e-57 226.9 222 52.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.3e-56 222.2 359 43.7
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 9.3e-53 211.5 203 51.7
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 9.3e-53 211.5 218 57.8
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.1e-52 210.3 210 47.1
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.1e-52 210.3 156 66.0
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-51 207.2 227 54.6
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 5.7e-50 202.2 198 48.5
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 5.7e-50 202.2 264 47.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.5e-45 186.8 159 62.3
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.3e-43 180.3 203 45.8
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 5.7e-42 175.6 276 43.1
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 4.1e-32 142.9 150 48.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 6.7e-27 125.6 68 82.4
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.6e-26 123.6 70 77.1
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 4.1e-24 116.3 206 35.0
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.3e-22 111.3 59 89.8
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 8.8e-19 98.6 113 53.1
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.2e-13 80.1 98 51.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 9.4e-13 78.6 92 41.3
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-12 78.2 89 44.9
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 2.7e-12 77.0 88 45.5
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 1.8e-11 74.3 89 43.8
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.8e-11 74.3 50 68.0
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 5.2e-11 72.8 95 43.2
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 5.2e-11 72.8 95 43.2
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 8.8e-11 72.0 92 44.6
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 4.4e-10 69.7 88 44.3
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 4.4e-10 69.7 167 32.3
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-09 67.8 49 69.4
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-09 67.4 56 55.4
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-09 67.4 49 67.3
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-09 67.4 58 53.4
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 2.8e-09 67.0 58 53.4
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 6.3e-09 65.9 58 51.7
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 6.3e-09 65.9 58 51.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 1.8e-08 64.3 58 51.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 4.1e-08 63.2 73 43.8
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 4.1e-08 63.2 56 51.8
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 5.4e-08 62.8 58 50.0
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 5.4e-08 62.8 58 50.0
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.0e-08 62.4 38 76.3
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-07 59.3 57 49.1
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.3e-06 58.2 28 82.1
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-06 57.8 50 56.0
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 5.0e-06 56.2 45 57.8
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 8.6e-06 55.5 34 70.6


User provided reference genes

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