Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 4.3e-286 987.6 632 100.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.8e-239 832.8 601 88.4
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 5.6e-169 598.6 634 62.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 7.2e-132 475.3 635 54.5
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 8.8e-130 468.4 635 54.3
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 8.0e-91 339.0 260 71.9
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.3e-88 331.6 649 40.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.2e-88 330.9 634 40.4
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 6.0e-86 322.8 638 37.1
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.0e-85 322.0 642 40.5
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.3e-85 320.9 659 38.7
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 5.2e-82 309.7 602 41.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.8e-81 306.2 623 35.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.7e-80 304.7 634 39.1
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.6e-78 298.1 632 41.0
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.3e-77 295.0 648 38.7
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.9e-77 293.5 675 38.2
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.5e-76 290.8 675 38.7
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 7.3e-76 289.3 598 35.3
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 9.5e-76 288.9 639 43.2
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.1e-75 287.7 604 36.6
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.7e-75 286.6 633 34.0
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 8.9e-74 282.3 634 37.4
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 7.5e-73 279.3 623 34.3
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 4.9e-72 276.6 753 31.2
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 4.1e-71 273.5 659 31.6
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.6e-70 271.6 673 34.0
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.1e-70 271.2 673 34.3
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 6.0e-70 269.6 634 33.1
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 6.6e-69 266.2 653 37.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.6e-67 260.4 658 38.1
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.4e-66 258.5 648 37.3
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.5e-65 255.0 647 32.5
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 3.4e-65 253.8 639 39.4
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 7.6e-65 252.7 633 31.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.3e-64 251.9 644 35.1
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.3e-64 251.9 626 37.2
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.4e-64 249.6 675 33.9
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.9e-63 248.1 645 33.8
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.4e-63 246.5 641 36.3
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.2e-62 245.4 754 32.2
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.8e-62 242.7 639 36.0
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.0e-61 242.3 637 43.2
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.3e-61 241.9 633 32.1
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.3e-61 241.9 601 30.4
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.0e-61 240.7 603 38.0
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 3.0e-61 240.7 600 37.2
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.5e-60 237.7 646 33.3
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.5e-60 237.7 901 28.7
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.8e-59 234.2 655 37.1
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 6.2e-59 233.0 756 30.2
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 8.1e-59 232.6 675 35.7
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.5e-57 228.4 635 32.0
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 4.4e-57 226.9 640 32.8
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 5.8e-57 226.5 639 39.6
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 9.9e-57 225.7 663 30.2
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.9e-56 224.2 640 34.4
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 4.9e-56 223.4 632 37.7
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 4.2e-55 220.3 635 30.2
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.4e-55 219.9 640 33.8
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 5.4e-55 219.9 706 30.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 9.3e-55 219.2 675 35.6
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.0e-53 215.7 640 36.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.3e-53 215.3 640 33.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.7e-53 214.9 641 35.7
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 6.6e-53 213.0 596 33.2
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.1e-52 212.2 638 31.2
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 1.5e-52 211.8 641 33.9
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.5e-52 211.1 641 35.6
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 2.8e-51 207.6 601 34.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.1e-50 205.7 639 30.2
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.8e-50 204.9 659 29.1
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.2e-49 202.2 641 33.1
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 1.7e-48 198.4 635 28.3
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 1.7e-48 198.4 635 28.3
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 5.4e-47 193.4 645 31.0
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.8e-45 188.3 635 30.2
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 8.7e-45 186.0 639 34.0
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.1e-44 185.7 640 33.8
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.3e-44 183.7 631 30.1
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.4e-42 178.7 711 29.8
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 2.4e-42 177.9 673 30.2
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.4e-42 177.9 440 34.1
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 9.0e-42 176.0 646 30.0
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.2e-41 175.6 717 30.0
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 6.4e-40 169.9 633 27.8
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 6.4e-40 169.9 679 28.9
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 4.2e-39 167.2 643 31.4
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 2.1e-38 164.9 643 32.2
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 4.6e-38 163.7 640 29.7
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 6.0e-38 163.3 661 28.4
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.8e-37 161.8 872 25.1
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.1e-36 159.1 636 31.3
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 4.3e-36 157.1 674 27.0
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 4.8e-35 153.7 625 29.1
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 4.8e-35 153.7 758 27.3
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 6.2e-35 153.3 642 31.2
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 6.9e-34 149.8 639 29.7
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.5e-33 148.7 650 32.9
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 3.4e-33 147.5 629 30.0
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.5e-31 140.2 252 37.7
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.0e-29 136.0 647 24.9
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 8.7e-29 132.9 647 27.5
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 4.8e-27 127.1 649 33.0
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 8.2e-27 126.3 315 28.9
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 5.3e-26 123.6 764 27.2
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.2e-25 122.5 228 37.3
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.5e-25 122.1 657 28.3
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.3e-24 119.0 648 28.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 2.2e-24 118.2 177 45.8
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 6.5e-24 116.7 170 44.1
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.9e-23 115.2 286 29.0
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.9e-23 115.2 286 29.0
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.2e-22 112.5 672 28.3
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 6.1e-22 110.2 139 44.6
Haze_23464 Corylus avellana HOM05D004923 ORTHO05D005940 1.0e-21 109.4 81 81.5
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 1.8e-21 108.6 554 24.4
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 3.3e-20 104.4 100 60.0
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 5.7e-20 103.6 645 29.1
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 5.7e-20 103.6 136 42.6
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 3.1e-18 97.8 217 35.5
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 2.0e-17 95.1 642 29.1
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.6e-17 94.7 233 33.9
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.4e-17 94.4 653 21.9
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 7.7e-17 93.2 758 28.4
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.3e-16 92.4 660 25.8
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 4.2e-15 87.4 615 28.5
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 9.4e-15 86.3 622 24.6
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.6e-14 85.5 291 23.7
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.6e-12 78.2 293 25.9
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 4.8e-11 73.9 260 31.5
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.4e-10 72.4 129 39.5
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 4.1e-10 70.9 288 25.7
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 4.1e-10 70.9 288 25.7
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 9.1e-10 69.7 241 25.7
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 5.9e-09 67.0 295 27.1
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 2.5e-07 61.6 154 31.8
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 3.2e-07 61.2 391 24.3
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 9.4e-07 59.7 283 26.1


User provided reference genes

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