Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.5e-160 568.2 272 100.0
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.1e-81 307.4 156 94.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.3e-79 299.7 151 96.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.8e-76 290.0 156 89.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.5e-73 280.4 156 87.8
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 6.8e-71 271.6 156 85.3
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 8.8e-71 271.2 156 85.3
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.4e-70 269.2 156 79.5
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.7e-70 268.5 156 83.3
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 5.7e-70 268.5 156 80.8
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 5.7e-70 268.5 156 82.7
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 5.7e-70 268.5 156 83.3
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 7.5e-70 268.1 166 79.5
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.3e-69 267.3 156 82.1
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.3e-69 267.3 156 83.3
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.3e-69 267.3 156 83.3
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.8e-69 266.2 153 83.7
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.8e-69 266.2 156 80.1
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 6.3e-69 265.0 153 83.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.1e-68 264.2 156 80.8
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.1e-68 264.2 156 80.1
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.4e-68 263.8 157 81.5
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.8e-68 263.5 161 82.0
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 83.3
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.8e-68 263.5 156 82.7
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.4e-68 263.1 156 79.5
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.4e-68 263.1 156 79.5
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.4e-68 263.1 156 82.7
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.1e-68 262.7 150 83.3
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 3.1e-68 262.7 158 80.4
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 7.0e-68 261.5 150 82.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 7.0e-68 261.5 156 82.1
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.2e-67 260.8 151 81.5
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.2e-67 260.8 158 79.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.6e-67 260.4 156 78.8
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 2.0e-67 260.0 154 80.5
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.0e-67 260.0 156 79.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 3.5e-67 259.2 154 78.6
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 4.5e-67 258.8 156 78.2
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 5.9e-67 258.5 153 79.7
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 7.7e-67 258.1 156 78.8
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.0e-66 257.7 156 79.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.0e-66 257.7 151 80.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-66 257.3 156 76.9
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-66 257.3 156 76.9
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.3e-66 257.3 156 78.8
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.3e-66 257.3 158 77.2
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-66 256.9 156 76.9
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.7e-66 256.9 156 79.5
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 2.3e-66 256.5 154 81.2
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.3e-66 256.5 156 80.1
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.3e-66 256.5 156 80.1
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.9e-66 256.1 156 80.1
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 5.0e-66 255.4 156 82.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.0e-66 255.4 156 79.5
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 5.0e-66 255.4 156 76.3
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 5.0e-66 255.4 156 76.9
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.0e-66 255.4 156 78.8
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.6e-66 255.0 156 78.8
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 6.6e-66 255.0 156 78.2
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 8.6e-66 254.6 156 78.2
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.6e-66 254.6 154 77.3
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.6e-66 254.6 156 82.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.6e-66 254.6 156 82.1
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 8.6e-66 254.6 156 76.3
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 8.6e-66 254.6 151 83.4
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.1e-65 254.2 156 78.2
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.5e-65 253.8 161 78.9
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.9e-65 253.4 156 76.9
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-65 253.4 158 77.2
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.9e-65 253.4 156 79.5
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.9e-65 253.4 156 80.1
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.5e-65 253.1 155 78.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.5e-65 253.1 157 81.5
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.3e-65 252.7 155 78.7
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.3e-65 252.7 155 78.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.3e-65 252.3 158 76.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.3e-65 251.5 155 77.4
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 9.5e-65 251.1 156 78.8
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.5e-65 251.1 156 80.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.2e-64 250.8 154 78.6
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.1e-64 250.0 156 77.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 2.1e-64 250.0 151 82.1
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.8e-64 249.6 156 76.9
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.8e-64 249.6 154 77.9
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.6e-64 249.2 156 76.9
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.6e-64 249.2 156 76.9
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 3.6e-64 249.2 156 76.9
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.7e-64 248.8 156 76.9
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 4.7e-64 248.8 156 76.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 4.7e-64 248.8 153 82.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 6.1e-64 248.4 156 76.9
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 6.1e-64 248.4 156 77.6
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 6.1e-64 248.4 156 77.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.1e-64 248.4 156 76.3
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.0e-64 248.1 156 77.6
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.4e-63 247.3 156 76.3
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.4e-63 247.3 151 80.1
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.4e-63 247.3 156 76.9
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.8e-63 246.9 156 77.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.3e-63 246.5 156 76.3
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.2e-63 245.4 156 76.3
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 6.8e-63 245.0 151 78.1
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 8.9e-63 244.6 156 75.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.6e-62 243.0 156 76.9
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.6e-62 243.0 156 75.6
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 4.4e-62 242.3 156 74.4
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 5.7e-62 241.9 156 74.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.3e-61 240.7 160 74.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.3e-61 240.7 156 77.6
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.4e-61 238.4 157 72.0
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 6.4e-61 238.4 157 72.0
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 7.0e-60 235.0 156 70.5
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 9.2e-60 234.6 159 72.3
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.2e-60 234.6 154 74.7
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.2e-59 234.2 208 62.5
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.0e-59 233.4 139 83.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.7e-59 233.0 155 72.9
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.9e-59 231.9 154 70.1
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 7.8e-59 231.5 156 68.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 3.0e-58 229.6 156 68.6
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 3.3e-57 226.1 150 70.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.2e-56 224.2 157 68.8
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.8e-56 223.0 155 69.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 8.9e-55 218.0 156 67.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 9.8e-54 214.5 154 64.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 2.9e-53 213.0 154 64.9
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.9e-52 210.3 156 62.2
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 3.5e-51 206.1 175 58.9
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.0e-50 204.5 172 59.9
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.1e-48 196.8 116 83.6
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 2.8e-48 196.4 119 80.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 2.8e-48 196.4 119 80.7
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 4.7e-48 195.7 119 78.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.0e-47 192.6 119 79.0
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.8e-46 188.7 119 75.6
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 8.3e-45 184.9 119 81.5
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 9.2e-44 181.4 123 73.2
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.0e-42 176.4 179 50.3
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-35 154.5 95 82.1
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.1e-35 153.7 99 72.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.6e-35 152.5 105 70.5
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 4.6e-35 152.5 140 51.4
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.7e-34 150.6 103 70.9
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 5.2e-31 139.0 75 84.0
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.9e-29 133.3 112 59.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-22 110.2 60 81.7
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 9.9e-22 108.2 117 47.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.1e-19 100.5 146 37.0
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 7.9e-19 98.6 161 36.0
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-18 97.8 118 47.5
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.7e-18 95.5 129 42.6
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-16 91.3 64 73.4
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-16 89.4 92 50.0
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 6.7e-10 68.9 38 81.6
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 3.3e-09 66.6 36 83.3
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.8e-07 60.8 34 79.4
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.8e-07 60.8 34 79.4
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 5.3e-07 59.3 42 71.4
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 5.8e-06 55.8 34 70.6


User provided reference genes

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