Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.2e-88 329.7 161 100.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.0e-83 312.4 161 94.4
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.7e-82 309.3 151 98.7
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.5e-81 306.2 156 94.9
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 2.8e-80 302.0 160 93.1
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 9.9e-78 293.5 161 90.7
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.3e-77 293.1 161 90.7
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 8.3e-77 290.4 161 88.8
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.1e-76 290.0 161 87.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.4e-76 289.7 161 83.9
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.9e-76 289.3 161 88.8
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 3.2e-76 288.5 161 85.7
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.1e-76 288.1 161 87.0
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.4e-76 287.7 161 87.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.4e-76 287.7 161 88.2
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 5.4e-76 287.7 161 85.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.6e-75 286.2 161 86.3
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.1e-75 285.8 162 87.0
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.7e-75 285.4 166 87.3
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.7e-75 285.4 161 85.1
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.7e-75 285.4 161 85.1
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.7e-75 285.4 161 88.2
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 4.6e-75 284.6 161 84.5
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.3e-74 283.1 161 87.6
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.3e-74 283.1 163 84.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 84.5
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.0
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.6
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.7e-74 282.7 161 87.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 5.1e-74 281.2 163 84.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 6.6e-74 280.8 161 86.3
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 8.6e-74 280.4 161 84.5
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.5e-73 279.6 161 83.9
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.5e-73 279.6 161 84.5
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.5e-73 279.6 162 84.0
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.9e-73 279.3 161 83.2
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 3.3e-73 278.5 161 84.5
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 3.3e-73 278.5 161 85.7
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 4.3e-73 278.1 161 84.5
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.3e-73 278.1 161 85.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.6e-73 277.7 161 85.1
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.6e-73 277.7 159 82.4
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.6e-73 277.7 159 82.4
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 7.3e-73 277.3 161 87.6
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.3e-73 277.3 159 82.4
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 7.3e-73 277.3 161 83.9
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 9.5e-73 276.9 161 83.9
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.6e-72 276.2 161 87.0
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.6e-72 276.2 161 87.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.1e-72 275.8 159 81.8
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.8e-72 275.4 161 84.5
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.6e-72 275.0 161 84.5
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 3.6e-72 275.0 161 83.2
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.6e-72 275.0 161 83.2
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 4.7e-72 274.6 161 81.4
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 6.2e-72 274.2 152 86.8
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.2e-72 274.2 161 82.6
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 8.1e-72 273.9 155 84.5
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.8e-71 272.7 161 84.5
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.4e-71 272.3 150 86.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.0e-71 271.6 161 83.9
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 5.2e-71 271.2 150 84.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 5.2e-71 271.2 161 81.4
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 6.8e-71 270.8 161 81.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 6.8e-71 270.8 161 81.4
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 8.9e-71 270.4 161 81.4
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 8.9e-71 270.4 161 81.4
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.9e-71 270.4 161 81.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.5e-70 269.6 161 81.4
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.0e-70 269.2 161 85.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.6e-70 268.9 159 83.0
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 2.6e-70 268.9 159 83.0
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 4.4e-70 268.1 161 79.5
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 4.4e-70 268.1 152 86.2
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.8e-70 267.7 161 81.4
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.6e-70 267.3 151 83.4
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 7.6e-70 267.3 153 83.0
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 9.9e-70 266.9 161 81.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 9.9e-70 266.9 159 81.8
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.9e-70 266.9 161 81.4
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.3e-69 266.5 161 82.6
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.7e-69 266.2 161 80.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.7e-69 266.2 161 79.5
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.2e-69 265.8 152 82.2
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.2e-69 265.8 152 82.2
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.9e-69 265.4 159 78.6
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 3.8e-69 265.0 154 79.9
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.8e-69 265.0 156 85.9
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 3.8e-69 265.0 161 81.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-68 263.5 155 79.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.4e-68 263.1 165 80.0
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.4e-68 263.1 161 80.7
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.9e-68 262.7 161 83.2
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.9e-68 262.7 155 82.6
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.4e-68 262.3 161 79.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.4e-68 262.3 161 78.9
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.1e-68 261.5 151 81.5
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 4.1e-68 261.5 151 85.4
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 7.1e-68 260.8 161 80.1
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.2e-68 260.4 151 80.8
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.2e-67 260.0 159 81.1
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.6e-67 259.6 154 81.2
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.1e-67 259.2 154 81.2
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.1e-67 259.2 154 81.2
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.1e-67 259.2 154 81.2
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.7e-67 258.8 162 76.5
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.7e-67 258.8 151 84.8
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.6e-67 258.1 154 79.9
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 4.6e-67 258.1 154 80.5
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 4.6e-67 258.1 152 85.5
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 7.8e-67 257.3 153 83.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 3.0e-66 255.4 164 77.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 3.0e-66 255.4 157 79.0
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 3.0e-66 255.4 159 76.1
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 3.0e-66 255.4 162 77.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 3.0e-66 255.4 161 77.0
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.9e-66 255.0 213 66.7
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.5e-65 253.1 153 79.7
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.1e-64 249.2 161 72.0
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.1e-64 247.3 161 72.0
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 6.9e-63 244.2 162 74.1
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.2e-62 243.4 139 86.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 9.9e-62 240.4 154 72.1
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.9e-62 240.4 154 76.0
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.4e-60 235.7 150 73.3
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 2.4e-60 235.7 159 72.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 3.2e-60 235.3 161 68.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.6e-59 233.0 161 68.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.3e-58 229.9 161 67.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.7e-58 229.6 153 72.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.7e-53 213.0 124 85.5
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.7e-53 213.0 124 85.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.7e-53 213.0 124 83.9
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.9e-52 209.5 124 84.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.7e-51 205.7 154 64.3
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.5e-51 205.3 124 79.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.5e-51 205.3 154 64.3
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.9e-49 199.5 115 85.2
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 6.9e-47 191.0 184 53.8
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.2e-46 190.3 117 84.6
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 4.5e-46 188.3 123 75.6
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.2e-38 163.7 145 53.8
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.9e-37 159.1 106 72.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.9e-37 159.1 95 84.2
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.9e-37 158.3 99 74.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.2e-36 155.6 103 72.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.1e-33 147.1 75 88.0
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.9e-28 129.8 109 60.6
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-24 116.3 60 85.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.4e-22 109.0 166 37.3
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.9e-20 103.2 162 37.0
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.5e-20 102.8 117 46.2
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.2e-20 102.4 118 49.2
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.0e-18 97.4 142 40.1
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-18 96.3 97 52.6
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.2e-16 89.7 63 74.6
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 6.1e-11 71.6 38 84.2
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 3.0e-10 69.3 36 86.1
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.8e-08 62.8 34 82.4
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 4.8e-08 62.0 149 32.2
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 1.6e-06 57.0 35 71.4
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.0e-06 56.6 36 77.8


User provided reference genes

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