Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 2321.6 1210 100.0
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 2057.3 1210 87.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1970.7 1210 84.3
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1912.1 1210 80.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1905.2 1210 80.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1876.3 1215 80.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1874.0 1215 79.0
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1867.8 1212 79.2
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1867.0 1211 79.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1865.9 1212 78.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1856.6 1210 78.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1854.0 1209 78.2
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1851.3 1208 78.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1851.3 1209 78.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1851.3 1208 77.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1841.6 1208 78.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1830.1 1211 78.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1820.8 1214 76.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1815.0 1207 76.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1815.0 1209 76.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1814.3 1206 76.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1812.0 1206 76.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1807.3 1206 76.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1806.2 1206 76.4
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1803.9 1206 76.4
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1798.9 1206 76.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1792.3 1216 75.3
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1784.2 1209 75.8
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1782.7 1212 75.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1779.6 1208 76.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1779.6 1202 75.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1776.9 1213 75.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1228 74.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1770.4 1184 76.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1770.4 1170 77.4
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1770.0 1207 75.3
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1766.5 1212 74.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1763.4 1209 73.4
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1762.7 1211 74.7
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1755.7 1180 76.9
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1750.3 1211 74.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1729.9 1212 74.3
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1724.9 1186 74.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1724.5 1206 73.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1723.8 1211 74.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1713.4 1169 74.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1712.2 1202 73.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1709.5 1200 73.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1708.0 1205 72.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1706.8 1212 72.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1697.6 1210 71.2
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1690.2 1202 72.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1683.7 1212 71.5
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1682.5 1212 70.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1678.3 1206 72.3
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1677.5 1205 71.7
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1676.0 1212 70.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1208 70.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1208 71.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1667.1 1208 70.4
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1661.7 1210 69.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1650.6 1205 71.1
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1650.6 1212 70.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1643.2 1206 69.2
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1639.0 1210 69.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1637.5 1211 69.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1123 74.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1211 69.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1210 69.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1208 69.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1630.2 1210 68.4
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1212 71.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1210 68.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1208 68.2
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1609.0 1208 68.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1607.0 1195 69.1
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1602.0 1209 67.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1597.4 1204 68.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1210 68.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1592.0 1210 67.6
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1591.2 1185 69.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1588.9 1183 68.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1588.5 1196 68.6
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1587.8 1206 68.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1222 66.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1577.8 1205 67.9
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1193 67.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1200 69.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1550.4 1262 65.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1500.3 1141 67.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1027 74.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 993 76.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1480.3 1292 62.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1204 63.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1441.4 1141 65.4
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1412.9 1209 63.1
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1409.8 836 88.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1381.3 1187 61.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1369.0 1207 59.4
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1359.0 1218 59.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1358.2 1196 58.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1260.7 1051 62.9
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1244.2 964 69.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1207.2 893 68.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1174.5 803 75.2
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1127.9 1154 56.2
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 9.8e-263 911.0 1193 46.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.8e-262 909.4 636 73.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.1e-261 905.6 1242 43.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.1e-256 889.4 1250 42.1
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.4e-254 881.7 1246 41.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.4e-253 880.6 1161 45.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 4.3e-250 869.0 1161 45.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-247 860.5 1185 44.6
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 6.2e-241 838.6 1068 47.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.6e-233 812.8 1214 40.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.4e-229 798.9 601 70.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 7.9e-220 768.5 793 52.7
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.3e-217 761.1 492 84.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.3e-206 724.5 1233 36.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.0e-198 696.0 638 57.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.6e-196 689.5 571 62.3
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.4e-181 641.3 540 61.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 8.2e-169 599.0 416 73.3
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.7e-151 540.8 486 57.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 4.9e-129 466.8 321 74.8
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-115 422.5 297 73.1
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.2e-81 308.5 210 73.8
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 4.3e-77 294.3 1388 23.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 8.2e-76 290.0 267 55.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.8e-73 281.2 210 67.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.3e-68 266.2 187 73.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.7e-60 238.0 207 60.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.2e-49 202.2 483 30.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.2e-49 202.2 475 30.9
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.2e-45 189.9 109 87.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.8e-34 150.6 1165 22.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.3e-25 122.5 96 65.6
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 6.8e-22 110.9 74 74.3
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 8.6e-17 94.0 90 56.7
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.1e-14 87.0 98 50.0
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.3e-14 85.9 346 25.1
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 5.2e-14 84.7 172 40.1
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.6e-13 82.4 63 68.3
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 7.5e-13 80.9 78 59.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 9.8e-13 80.5 79 53.2
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.4e-12 77.8 50 78.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.4e-12 77.8 50 78.0
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.4e-11 76.6 72 59.7
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.2e-10 73.6 76 48.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.7e-10 72.4 76 50.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 3.5e-10 72.0 62 62.9
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.0e-09 70.5 317 24.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-09 70.1 65 60.0
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 2.3e-09 69.3 107 43.9
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 3.9e-09 68.6 65 58.5
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 4.3e-08 65.1 93 46.2
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.1e-07 60.8 181 26.5
Sc06g0003570 Simmondsia chinensis HOM05D004384 ORTHO05D005797 4.0e-06 58.5 42 64.3


User provided reference genes

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