Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.3e-161 573.2 329 100.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 6.3e-156 554.3 333 96.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.4e-142 510.0 270 88.1
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.2e-142 508.1 271 87.5
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.4e-140 501.1 268 87.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.4e-139 500.0 268 85.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.2e-139 498.8 267 87.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.4e-139 498.0 268 84.7
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.2e-138 496.9 267 85.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.6e-138 496.5 263 87.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.6e-138 496.5 263 86.7
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.6e-138 496.5 267 85.0
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.0e-138 496.1 268 85.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 5.9e-138 494.6 270 85.6
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.7e-137 493.0 263 86.3
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.3e-137 492.7 269 85.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.0e-137 492.3 267 85.4
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.9e-137 491.9 261 85.4
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.0e-137 491.5 267 83.9
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.6e-137 491.1 267 85.4
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 6.6e-137 491.1 262 86.6
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 8.6e-137 490.7 263 85.9
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 8.6e-137 490.7 266 85.0
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.5e-136 490.0 267 83.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.5e-136 490.0 267 83.5
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.9e-136 489.6 269 84.4
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 263 85.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.5e-136 489.2 267 84.3
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 272 83.8
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.3e-136 488.8 267 84.3
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.3e-136 488.4 263 86.3
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.3e-136 488.4 267 83.1
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.3e-136 488.4 267 85.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 5.6e-136 488.0 263 84.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 5.6e-136 488.0 267 84.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 7.3e-136 487.6 282 81.2
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 9.5e-136 487.3 263 85.6
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 9.5e-136 487.3 268 82.8
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.2e-135 486.9 263 84.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.2e-135 486.9 269 84.0
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.2e-135 486.9 269 84.0
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.6e-135 486.5 267 83.1
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.6e-135 486.5 267 83.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.1e-135 486.1 266 83.1
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-135 485.7 267 82.8
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.6e-135 485.3 263 85.2
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 8.0e-135 484.2 258 86.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.1e-134 483.8 263 84.4
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.3e-134 482.6 266 83.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.3e-134 482.6 263 84.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.1e-134 482.3 264 85.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.1e-134 482.3 273 83.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 5.2e-134 481.5 269 82.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.2e-134 481.5 262 84.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 8.9e-134 480.7 269 82.5
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.2e-133 480.3 266 84.2
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.2e-133 480.3 269 82.2
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.6e-133 479.2 263 84.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.4e-133 478.4 262 83.2
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 5.8e-133 478.0 263 83.3
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-132 476.9 266 82.7
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.2e-132 476.1 280 80.0
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.1e-131 473.8 264 82.6
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.1e-131 473.8 263 81.7
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.4e-131 473.4 263 84.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.4e-131 473.4 263 83.3
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 7.0e-131 471.1 242 90.9
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.2e-131 470.7 263 82.5
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-130 470.3 269 80.7
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-130 469.9 263 82.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.7e-130 469.2 273 79.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.7e-130 469.2 273 81.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 3.5e-130 468.8 261 82.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.5e-130 468.8 264 82.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.6e-130 468.4 269 80.7
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.6e-130 468.4 260 81.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 6.0e-130 468.0 261 80.5
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 6.0e-130 468.0 261 82.4
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 6.0e-130 468.0 264 81.8
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.0e-130 468.0 273 79.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 7.8e-130 467.6 261 80.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 7.8e-130 467.6 261 80.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.3e-129 466.8 261 80.1
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.3e-129 466.8 265 81.1
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-129 465.7 261 80.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.1e-128 463.8 269 78.8
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.5e-128 462.6 258 82.9
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 3.3e-128 462.2 258 82.9
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 4.3e-128 461.8 263 79.5
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.3e-128 461.8 263 79.8
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 7.3e-128 461.1 263 80.2
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 9.5e-128 460.7 263 79.8
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-127 460.3 263 79.5
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.6e-127 459.9 263 79.1
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.6e-127 459.9 265 81.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.8e-127 459.1 264 79.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.8e-127 459.1 263 79.1
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.8e-127 459.1 263 79.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.6e-127 458.8 263 78.7
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 8.1e-127 457.6 264 80.7
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.8e-126 456.4 263 79.8
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 5.2e-126 454.9 273 76.6
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 8.9e-126 454.1 266 79.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.5e-125 453.4 264 78.8
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-125 453.0 261 79.3
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-125 453.0 261 79.3
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.6e-125 452.6 263 78.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.8e-125 451.4 262 79.0
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 5.8e-125 451.4 262 79.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.2e-124 449.5 242 85.1
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.9e-124 449.1 264 79.2
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.1e-123 447.2 272 76.5
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.1e-122 443.0 262 79.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.1e-122 443.0 262 79.4
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.3e-120 435.6 233 86.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.8e-119 432.6 270 74.8
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 6.8e-118 427.9 272 72.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 3.8e-116 422.2 261 75.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.4e-115 420.2 270 74.1
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.9e-115 419.9 268 74.6
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 3.2e-115 419.1 247 82.2
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.7e-114 416.0 218 88.5
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.6e-114 415.2 216 87.5
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 4.6e-114 415.2 216 85.6
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.5e-112 410.2 221 86.0
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.1e-111 406.4 218 83.5
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 4.7e-111 405.2 219 85.4
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 7.8e-106 387.9 208 86.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.8e-103 378.6 264 67.8
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.1e-102 375.9 266 68.0
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.9e-102 374.8 265 67.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.6e-101 372.9 216 78.7
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.9e-96 356.7 231 73.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.8e-95 352.8 263 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 9.3e-91 337.8 270 61.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.9e-80 303.5 260 57.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 5.7e-80 302.0 151 90.7
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-77 293.9 154 85.7
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.8e-76 289.3 169 78.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.9e-73 279.3 216 65.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.2e-69 267.7 175 70.9
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 7.7e-69 265.0 161 77.6
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 7.9e-66 255.0 140 82.1
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.0e-65 254.6 140 81.4
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 6.7e-65 251.9 144 81.2
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 9.7e-56 221.5 126 79.4
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.1e-50 202.2 147 63.9
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-40 171.4 134 63.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.2e-18 98.2 81 59.3
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 5.4e-14 82.8 49 73.5
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.9e-12 76.6 47 72.3
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.1e-11 75.1 43 79.1
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.9e-11 74.3 62 56.5


User provided reference genes

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