Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 5.2e-125 451.1 227 100.0
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.3e-107 393.3 322 68.6
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.1e-97 359.4 217 84.3
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 7.6e-92 340.9 232 79.3
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.3e-91 340.1 189 89.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.2e-89 333.6 255 72.5
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.0e-88 330.5 224 75.0
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.1e-88 328.2 227 75.8
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 8.7e-88 327.4 206 83.0
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.5e-87 326.6 205 82.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.9e-87 326.2 225 76.0
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.3e-86 323.6 194 83.5
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.6e-86 323.2 227 74.4
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.1e-86 322.8 213 79.3
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 2.1e-86 322.8 225 75.1
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 4.8e-86 321.6 229 72.9
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 8.1e-86 320.9 227 75.3
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 2.0e-84 316.2 200 81.5
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.5e-84 315.1 222 74.8
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 9.9e-84 313.9 224 73.2
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.7e-83 313.2 223 75.3
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.9e-82 309.7 205 76.6
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.9e-82 309.7 221 73.8
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 7.1e-82 307.8 194 79.4
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.1e-81 306.2 222 73.4
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 2.1e-81 306.2 191 79.1
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 2.7e-81 305.8 223 71.7
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 4.6e-81 305.1 192 79.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 7.9e-81 304.3 192 79.2
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.0e-80 303.9 209 75.1
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.8e-80 303.1 187 79.7
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.3e-80 302.8 221 71.9
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.9e-80 302.0 222 71.2
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 3.9e-80 302.0 197 79.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 5.1e-80 301.6 225 70.7
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.5e-79 300.1 204 73.5
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 1.5e-79 300.1 193 78.2
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 3.3e-79 298.9 202 74.8
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 4.3e-79 298.5 189 77.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.4e-79 297.7 225 69.8
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 7.4e-79 297.7 224 68.8
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.7e-78 295.4 206 72.8
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 6.2e-78 294.7 187 77.0
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.8e-77 293.1 206 73.3
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.8e-77 293.1 187 78.1
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.2e-76 290.4 204 72.1
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.2e-76 290.4 212 69.3
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.5e-76 290.0 190 75.3
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 2.0e-76 289.7 172 85.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.4e-76 288.9 221 68.3
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 7.6e-76 287.7 186 76.9
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.3e-75 287.0 222 68.9
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.7e-75 286.6 202 70.8
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.2e-75 286.2 206 70.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.2e-75 286.2 207 68.1
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 4.9e-75 285.0 232 65.9
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 8.4e-75 284.3 198 70.7
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.4e-74 283.5 201 71.6
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.9e-74 283.1 218 67.4
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 1.9e-74 283.1 219 67.1
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.5e-74 282.7 226 65.9
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 3.2e-74 282.3 197 69.5
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 5.5e-74 281.6 196 74.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 9.3e-74 280.8 207 69.1
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.2e-73 280.4 207 69.6
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.2e-73 280.4 188 75.5
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.6e-73 280.0 183 74.9
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.6e-73 280.0 197 69.0
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 2.1e-73 279.6 207 68.6
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.1e-73 279.6 201 70.6
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.1e-73 279.6 221 66.1
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 4.6e-73 278.5 190 72.1
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 6.0e-73 278.1 190 73.7
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 6.0e-73 278.1 188 72.9
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 7.9e-73 277.7 206 68.4
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.0e-72 277.3 206 68.9
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 1.8e-72 276.6 199 70.4
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.3e-72 276.2 207 69.1
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 3.9e-72 275.4 199 69.8
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 6.7e-72 274.6 187 71.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 1.9e-71 273.1 292 54.1
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 2.5e-71 272.7 188 71.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 4.3e-71 271.9 172 78.5
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 5.7e-71 271.6 207 68.6
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 1.6e-70 270.0 172 77.9
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 3.7e-70 268.9 197 69.0
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 8.2e-70 267.7 197 68.5
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 9.0e-69 264.2 210 66.7
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.3e-67 260.4 172 72.7
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 5.5e-66 255.0 200 64.0
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 6.1e-65 251.5 139 87.1
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 3.0e-64 249.2 176 69.3
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 1.1e-61 240.7 212 58.5
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.8e-61 240.0 192 62.0
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 9.0e-61 237.7 150 77.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.7e-59 233.4 190 61.6
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.1e-58 230.7 190 63.2
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.5e-58 228.4 183 65.6
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.1e-57 226.5 212 56.1
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 6.7e-56 221.5 163 68.7
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 4.3e-55 218.8 135 77.0
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 4.3e-55 218.8 186 59.7
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 9.1e-53 211.1 194 55.2
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.6e-52 209.5 194 54.6
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 8.8e-40 167.9 168 54.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 7.5e-39 164.9 92 87.0
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.3e-38 164.1 168 51.8
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-37 161.0 168 51.2
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.2e-33 147.5 174 48.3
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-33 147.1 93 76.3
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 8.0e-33 144.8 121 68.6
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.4e-31 139.0 134 59.0
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-28 130.2 78 80.8
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.5e-28 129.0 78 79.5
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.5e-27 124.8 78 76.9
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.2e-25 120.9 74 77.0
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.9e-22 109.0 61 82.0
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.4e-21 107.5 61 80.3
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 3.5e-20 102.8 219 32.4
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.3e-19 100.1 77 64.9
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.4e-16 90.9 54 81.5
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 7.3e-10 68.6 36 83.3
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 9.5e-10 68.2 40 77.5
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 4.7e-09 65.9 35 88.6
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 8.0e-09 65.1 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.0e-08 64.7 39 76.9


User provided reference genes

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