Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.0e-162 576.6 290 100.0
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.3e-148 528.5 301 88.4
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.3e-144 516.5 301 86.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.6e-142 508.1 300 85.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.1e-140 503.4 301 85.0
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.1e-138 496.9 300 83.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.1e-138 495.4 300 82.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 4.0e-138 495.0 300 81.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 5.2e-138 494.6 300 82.3
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 5.2e-138 494.6 301 82.4
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 5.2e-138 494.6 300 82.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 6.8e-138 494.2 301 82.4
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 8.9e-138 493.8 300 81.7
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.5e-137 493.0 301 82.7
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.5e-137 493.0 300 81.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.0e-137 492.7 300 81.7
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 4.4e-137 491.5 301 82.4
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 7.6e-137 490.7 300 81.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 7.6e-137 490.7 316 78.8
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 7.6e-137 490.7 301 83.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.7e-136 489.6 301 83.4
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.9e-136 488.8 300 81.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 4.9e-136 488.0 301 80.4
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.4e-136 487.6 301 82.4
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.4e-135 486.5 301 80.4
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.2e-135 485.3 301 81.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 4.2e-135 485.0 301 82.1
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 4.2e-135 485.0 301 81.1
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 82.1
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 80.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.1e-134 482.6 301 80.4
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.1e-134 482.6 301 80.1
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.7e-134 482.3 301 80.4
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.5e-134 481.9 301 80.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 3.5e-134 481.9 301 81.1
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.5e-134 481.9 301 81.1
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.0e-133 480.3 301 80.1
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.3e-133 479.9 301 80.7
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 2.3e-133 479.2 301 78.7
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.0e-133 478.8 299 81.3
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.0e-133 478.8 299 80.9
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 5.1e-133 478.0 301 80.1
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.7e-133 477.2 301 78.4
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.9e-132 476.1 301 79.4
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.9e-132 476.1 300 79.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.3e-132 475.3 297 81.1
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 7.3e-132 474.2 301 79.4
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 7.3e-132 474.2 301 78.4
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 7.3e-132 474.2 301 78.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 9.6e-132 473.8 300 77.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.1e-131 472.6 301 79.1
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 2.8e-131 472.2 301 78.1
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 2.8e-131 472.2 301 77.4
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 3.6e-131 471.9 301 77.7
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 3.6e-131 471.9 301 79.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 6.2e-131 471.1 301 77.4
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 8.1e-131 470.7 301 79.1
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.8e-130 469.5 302 77.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.1e-130 468.8 300 76.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.0e-130 468.4 300 77.7
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 5.3e-130 468.0 302 77.2
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 5.3e-130 468.0 300 76.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.3e-130 468.0 302 77.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 6.9e-130 467.6 300 77.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 6.9e-130 467.6 301 78.4
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 9.0e-130 467.2 301 76.4
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.0e-129 466.1 301 77.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 2.6e-129 465.7 301 76.7
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 7.6e-129 464.2 303 76.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 9.9e-129 463.8 300 76.0
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.3e-128 463.4 303 76.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.2e-128 462.6 302 76.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.2e-128 462.6 302 76.8
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.9e-128 462.2 303 76.2
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 2.9e-128 462.2 300 77.3
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.8e-128 461.8 303 76.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 6.4e-128 461.1 302 76.5
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 6.4e-128 461.1 300 76.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 8.4e-128 460.7 303 75.9
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.1e-127 460.3 300 75.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.9e-127 459.5 299 75.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.4e-127 459.1 302 76.2
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 3.2e-127 458.8 299 76.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 4.2e-127 458.4 303 76.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.2e-127 458.4 303 75.6
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.2e-126 456.8 300 76.0
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.6e-126 456.4 303 76.2
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.1e-126 456.1 300 75.0
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.5e-126 455.3 321 72.0
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.9e-125 451.8 303 75.2
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.1e-124 450.3 303 73.6
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.1e-124 450.3 301 76.1
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 1.5e-124 449.9 299 75.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.9e-124 449.5 300 74.7
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.3e-124 448.4 301 74.8
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.4e-124 447.6 300 74.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.1e-123 446.0 300 74.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 4.8e-123 444.9 301 72.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 8.1e-123 444.1 303 74.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 8.1e-123 444.1 303 72.3
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 8.1e-123 444.1 300 74.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.1e-122 443.7 303 73.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.4e-122 443.4 316 70.9
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.4e-122 443.4 302 73.5
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-122 443.4 301 74.1
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.0e-122 441.8 300 73.7
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.2e-121 440.3 303 73.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 3.8e-120 435.3 298 72.1
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.2e-119 432.2 340 67.1
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 9.3e-119 430.6 299 71.2
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 7.9e-118 427.6 306 71.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.0e-117 425.6 336 67.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.7e-117 424.1 301 71.8
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.2e-113 413.7 246 82.9
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.0e-113 412.9 287 71.8
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.0e-112 410.6 259 78.4
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 5.5e-111 404.8 241 83.0
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.7e-110 402.5 293 67.9
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.3e-109 400.2 301 70.1
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.0e-109 399.1 299 64.5
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.7e-109 397.9 287 71.4
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 5.7e-108 394.8 310 68.1
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.4e-106 390.2 342 60.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.4e-106 390.2 293 65.2
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 7.6e-105 384.4 288 65.6
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 4.3e-100 368.6 300 64.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 5.0e-96 355.1 299 59.9
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.2e-95 352.4 202 91.6
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.1e-94 349.7 509 43.8
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 7.9e-94 347.8 298 60.7
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 6.3e-91 338.2 291 57.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 8.2e-91 337.8 209 80.4
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 5.3e-90 335.1 209 79.9
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 7.9e-86 321.2 220 73.6
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.3e-75 285.0 249 58.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 5.3e-74 282.0 239 65.3
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.1e-70 270.0 293 49.5
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.0e-68 263.5 243 60.5
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.7e-57 226.5 154 76.6
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.5e-47 194.1 298 38.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.4e-45 187.6 298 38.3
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 8.6e-40 168.3 101 79.2
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.1e-39 167.9 172 52.3
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.9e-35 152.5 108 71.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.0e-32 143.3 84 81.0
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.6e-30 137.5 196 46.9
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.1e-26 122.9 84 73.8
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.1e-23 114.8 83 67.5
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.7e-22 109.4 70 75.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.4e-21 107.8 145 41.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 5.2e-21 105.9 238 28.2
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.6e-20 103.6 63 74.6
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 5.4e-18 95.9 122 49.2
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.8e-14 83.6 161 35.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 5.3e-13 79.3 87 56.3
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.8e-11 73.2 55 67.3
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 7.1e-10 68.9 77 55.8
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 3.9e-08 63.2 63 57.1
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.5e-07 61.2 40 72.5
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 1.9e-07 60.8 63 50.8


User provided reference genes

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