Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 9.7e-181 636.7 329 100.0
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 5.0e-161 571.2 329 90.9
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 1.1e-123 447.2 329 72.0
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 1.1e-118 430.6 386 63.5
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 4.9e-116 421.8 325 67.1
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 4.6e-114 415.2 327 65.7
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 1.1e-112 410.6 329 65.3
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 3.3e-112 409.1 332 62.3
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 4.0e-110 402.1 329 63.2
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 4.0e-110 402.1 329 64.4
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 6.9e-110 401.4 330 61.8
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 2.0e-109 399.8 334 63.2
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 4.4e-109 398.7 325 64.3
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 1.3e-108 397.1 325 64.3
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.7e-108 396.7 325 62.5
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 2.2e-108 396.4 326 63.2
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 4.9e-108 395.2 326 63.2
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 4.9e-108 395.2 333 63.4
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 6.4e-108 394.8 329 62.0
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 1.1e-107 394.0 329 61.7
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.1e-107 394.0 329 62.0
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.4e-107 393.7 329 61.7
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 2.4e-107 392.9 330 63.0
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.4e-107 392.9 329 62.0
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 2.4e-107 392.9 332 60.8
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 3.2e-107 392.5 333 61.6
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 7.1e-107 391.3 325 64.0
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.3e-107 391.0 329 61.7
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.1e-106 389.8 334 59.3
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 3.5e-106 389.0 333 61.3
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 3.5e-106 389.0 334 59.0
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 6.0e-106 388.3 330 63.0
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 2.3e-105 386.3 314 64.6
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 3.0e-105 386.0 334 58.7
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 2.8e-103 379.4 323 61.3
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 4.8e-103 378.6 330 61.2
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 1.1e-102 377.5 326 58.6
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 1.1e-102 377.5 330 59.1
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 2.4e-102 376.3 326 60.7
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 5.3e-102 375.2 329 60.2
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.3e-100 370.5 335 58.8
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 2.9e-100 369.4 325 59.1
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.1e-99 367.5 323 59.4
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 1.4e-99 367.1 328 60.1
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 7.1e-99 364.8 329 55.3
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 1.6e-98 363.6 326 57.1
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 6.0e-98 361.7 326 56.4
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 7.9e-98 361.3 330 57.9
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.0e-97 360.9 325 58.8
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 1.3e-97 360.5 326 57.4
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 1.8e-97 360.1 329 55.3
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 6.7e-97 358.2 327 56.6
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 1.1e-96 357.5 328 55.2
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 1.9e-96 356.7 330 56.4
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 1.9e-96 356.7 383 54.6
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 3.3e-96 355.9 344 54.9
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 7.4e-96 354.8 327 56.3
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 2.8e-95 352.8 326 57.1
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 6.2e-95 351.7 329 54.7
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 1.4e-94 350.5 384 54.2
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 1.4e-94 350.5 332 57.8
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 1.8e-94 350.1 328 57.9
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 4.0e-94 349.0 325 56.6
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 5.3e-94 348.6 326 56.7
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 5.3e-94 348.6 326 56.4
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 3.4e-93 345.9 329 55.9
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 4.5e-93 345.5 330 58.2
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 2.2e-92 343.2 323 54.8
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 3.8e-92 342.4 331 55.0
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 3.8e-92 342.4 331 55.0
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 9.3e-91 337.8 328 55.5
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 3.7e-87 325.9 403 46.4
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 3.7e-87 325.9 212 76.9
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 1.8e-86 323.6 332 52.7
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.2e-85 320.9 325 50.2
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 2.0e-85 320.1 262 63.4
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 3.4e-85 319.3 329 51.7
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 3.8e-84 315.8 326 53.1
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.9e-84 315.5 328 53.4
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.9e-84 315.5 328 53.4
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 2.5e-83 313.2 325 49.8
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 3.2e-83 312.8 326 50.3
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 4.2e-83 312.4 324 49.7
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 5.5e-83 312.0 330 53.0
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.6e-82 310.5 324 48.8
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 5.7e-80 302.0 325 48.0
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 7.4e-80 301.6 325 48.9
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 1.3e-79 300.8 320 50.0
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 2.2e-79 300.1 325 48.9
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 2.2e-79 300.1 325 48.0
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 2.2e-79 300.1 325 48.9
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 4.8e-79 298.9 319 49.2
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 4.8e-79 298.9 328 49.4
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 4.1e-78 295.8 301 53.2
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 4.1e-78 295.8 335 50.4
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.6e-77 293.1 326 47.5
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 1.6e-74 283.9 325 48.0
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 3.6e-74 282.7 330 48.5
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 5.1e-73 278.9 325 48.3
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 2.5e-67 260.0 225 59.1
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 8.8e-65 251.5 233 58.8
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 2.9e-52 209.9 338 37.6
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 2.7e-45 186.8 336 32.7
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 4.0e-41 172.9 325 33.5
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.2e-34 151.4 322 33.2
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 6.8e-33 145.6 286 32.5
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 3.7e-31 139.8 230 33.9
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.1e-18 97.4 261 31.0
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 4.7e-18 96.3 253 28.5
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 8.0e-18 95.5 257 30.0
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 8.0e-18 95.5 254 28.3
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 1.1e-17 95.1 174 35.1
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 1.8e-17 94.4 257 29.2
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.8e-17 94.4 254 27.6
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 1.8e-17 94.4 256 29.7
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 2.3e-17 94.0 256 29.3
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 3.1e-17 93.6 256 29.3
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 4.0e-17 93.2 255 29.8
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 4.0e-17 93.2 260 29.2
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.8e-17 92.4 256 28.5
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.0e-16 90.9 260 28.8
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 3.4e-16 90.1 255 29.4
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 4.4e-16 89.7 256 27.3
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 7.5e-16 89.0 258 28.7
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 9.8e-16 88.6 246 29.7
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.3e-15 88.2 80 52.5
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.7e-15 87.8 256 28.1
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.2e-15 87.4 256 27.7
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 4.9e-15 86.3 253 28.5
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 4.9e-15 86.3 257 27.6
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 4.9e-15 86.3 339 23.9
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 6.4e-15 85.9 252 27.0
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.1e-14 85.1 280 27.1
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 1.1e-14 85.1 257 27.2
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.1e-14 85.1 308 27.9
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.4e-14 84.7 257 28.4
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 2.4e-14 84.0 255 25.9
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 2.4e-14 84.0 235 29.8
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 5.4e-14 82.8 260 26.9
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 7.0e-14 82.4 235 29.4
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 9.2e-14 82.0 256 28.5
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 6.0e-13 79.3 253 28.1
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 6.0e-13 79.3 259 27.4
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 1.3e-12 78.2 256 25.4
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 1.7e-12 77.8 260 25.4
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 1.7e-12 77.8 255 25.9
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 3.9e-12 76.6 271 25.8
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 5.1e-12 76.3 255 25.1
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 5.1e-12 76.3 259 25.1
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 6.6e-12 75.9 256 26.6
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 8.6e-12 75.5 136 38.2
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 1.1e-11 75.1 253 26.9
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 1.1e-11 75.1 339 23.6
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 1.9e-11 74.3 259 27.0
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 3.3e-11 73.6 255 25.1
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 5.6e-11 72.8 257 24.5
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.6e-10 71.2 203 29.1
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 1.6e-10 71.2 92 41.3
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 6.2e-10 69.3 305 23.9
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 6.8e-09 65.9 341 23.5
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 6.8e-09 65.9 267 26.6
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 1.2e-08 65.1 257 23.7
Sabra13G0037400 Salix brachista HOM05D006821 ORTHO05D349522 4.9e-07 59.7 58 58.6
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 6.4e-07 59.3 128 26.6
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.1e-06 58.5 126 26.2
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 3.2e-06 57.0 102 41.2
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 4.1e-06 56.6 112 28.6
unitig_61.g26436 Utricularia gibba HOM05D001532 ORTHO05D001402 4.1e-06 56.6 112 27.7
Duzib093G0614 Durio zibethinus HOM05D001532 ORTHO05D001402 9.2e-06 55.5 113 29.2


User provided reference genes

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