Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 7.1e-237 823.5 418 100.0
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 7.2e-173 610.9 415 77.6
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-162 576.6 398 76.1
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 9.8e-162 573.9 398 75.1
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.5e-151 538.9 388 75.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.4e-144 515.0 432 62.3
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 2.8e-140 502.7 430 63.7
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 1.2e-138 497.3 427 60.2
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.4e-136 490.3 430 62.6
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 6.6e-134 481.5 400 63.0
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 3.3e-133 479.2 456 56.8
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 3.6e-132 475.7 418 58.6
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-131 473.8 418 58.4
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.9e-131 471.5 443 56.4
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 8.4e-129 464.5 425 58.8
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.1e-127 459.9 418 57.7
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 3.5e-127 459.1 419 58.2
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 8.7e-126 454.5 419 59.4
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.3e-125 452.6 440 54.8
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.3e-125 452.2 415 61.9
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 5.6e-125 451.8 429 57.6
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 7.3e-125 451.4 411 57.7
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 2.8e-124 449.5 415 61.7
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 6.2e-124 448.4 442 54.3
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 8.1e-124 448.0 435 56.8
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.4e-123 446.4 437 57.4
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 5.3e-123 445.3 418 58.1
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.4e-122 442.6 435 54.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 5.8e-122 441.8 436 57.6
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 4.9e-121 438.7 445 57.1
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 6.4e-121 438.3 432 57.4
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 8.4e-121 438.0 393 62.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 8.4e-121 438.0 437 56.5
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.1e-120 437.6 433 56.4
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.5e-117 426.4 424 55.4
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 9.6e-117 424.5 414 53.1
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.6e-116 423.7 414 53.1
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.7e-116 422.5 414 52.9
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.1e-116 421.4 418 55.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.1e-115 419.5 418 54.5
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.1e-115 419.5 414 52.9
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 6.9e-115 418.3 460 53.7
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.0e-115 417.9 418 54.1
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 1.2e-114 417.5 410 56.8
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.2e-114 417.5 427 54.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.2e-114 417.5 427 54.1
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 5.8e-114 415.2 446 52.7
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 6.4e-113 411.8 442 56.6
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 6.4e-113 411.8 416 58.4
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 6.4e-113 411.8 422 53.6
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 8.4e-113 411.4 434 54.6
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.1e-112 411.0 419 54.4
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 4.2e-112 409.1 401 53.6
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 5.5e-112 408.7 402 56.5
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.1e-111 406.8 396 57.3
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.7e-111 406.4 420 51.9
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.7e-111 406.4 404 54.7
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.8e-110 403.7 378 55.6
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.3e-110 403.3 411 52.8
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-110 402.1 418 52.9
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.1e-110 402.1 415 53.0
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.1e-109 401.0 411 52.6
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.5e-109 400.6 388 55.7
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 2.5e-109 399.8 403 54.8
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.3e-109 399.4 415 52.8
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-108 396.7 423 53.0
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.1e-108 396.7 419 51.8
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 3.7e-108 396.0 434 49.8
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 8.2e-108 394.8 394 57.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.5e-106 390.6 455 47.3
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.6e-106 389.8 455 47.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.7e-105 387.1 423 53.7
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.7e-105 387.1 395 55.2
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.9e-104 383.6 408 51.2
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.1e-103 380.2 423 49.2
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.0e-102 377.9 431 51.7
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 8.7e-102 374.8 412 52.2
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 2.2e-100 370.2 520 43.1
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 4.5e-98 362.5 398 51.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.0e-97 361.3 421 49.6
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.0e-97 361.3 421 49.6
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-96 357.8 403 52.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 4.6e-95 352.4 377 51.2
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 8.7e-94 348.2 458 43.7
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.5e-93 346.7 407 47.2
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.8e-92 343.2 309 60.5
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.7e-92 342.8 371 50.1
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 4.8e-92 342.4 282 64.5
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.3e-92 342.0 423 46.8
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-91 341.3 427 45.9
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.4e-91 340.9 442 45.9
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.4e-91 340.1 431 47.3
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.2e-90 337.8 377 49.6
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.0e-90 337.0 429 49.0
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 5.9e-90 335.5 428 44.9
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 7.7e-90 335.1 310 60.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.3e-89 334.3 303 60.1
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 6.5e-89 332.0 442 45.0
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.0e-86 323.2 306 57.5
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 8.8e-86 321.6 400 46.0
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 5.5e-80 302.4 237 67.1
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.0e-79 298.5 426 44.1
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.0e-77 293.9 438 44.7
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.7e-76 290.8 365 46.3
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 5.9e-74 282.3 170 83.5
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-73 281.6 253 58.9
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 3.1e-67 260.0 483 36.4
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 4.1e-67 259.6 168 82.1
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 4.5e-66 256.1 295 47.8
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.7e-66 255.4 401 39.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 5.5e-64 249.2 266 51.9
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 9.4e-64 248.4 189 68.3
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.0e-62 245.0 244 52.9
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-61 241.1 200 67.0
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-59 234.2 164 72.6
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 3.5e-58 229.9 437 34.8
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.3e-57 227.3 185 66.5
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 4.2e-56 223.0 431 34.6
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 5.5e-56 222.6 298 47.3
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.0e-54 218.4 550 29.8
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 2.8e-52 210.3 190 54.7
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.9e-49 200.3 216 47.7
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 2.8e-47 193.7 478 32.2
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 4.7e-47 193.0 300 42.7
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.6e-42 177.9 426 29.6
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.0e-41 175.3 227 49.8
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.0e-41 175.3 227 49.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 6.6e-41 172.6 168 60.1
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.5e-37 161.4 428 31.1
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 5.4e-35 152.9 183 49.2
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.1e-34 151.0 189 46.0
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 1.0e-33 148.7 153 56.2
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 4.7e-31 139.8 211 40.8
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 3.1e-30 137.1 112 62.5
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 1.7e-28 131.3 259 34.7
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 3.7e-28 130.2 97 63.9
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 7.8e-26 122.5 129 48.8
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 5.1e-25 119.8 124 50.0
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 2.8e-23 114.0 205 37.6
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 8.4e-20 102.4 169 36.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.2e-19 100.5 66 74.2
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.2e-18 98.6 96 54.2
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 2.3e-17 94.4 117 46.2
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 5.2e-14 83.2 162 32.1
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 4.4e-13 80.1 91 51.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 4.4e-13 80.1 60 68.3
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 7.8e-10 69.3 98 41.8
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 3.3e-08 63.9 95 36.8
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 4.8e-07 60.1 41 61.0


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