Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 8.6e-79 298.9 170 100.0
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.3e-74 285.0 170 84.1
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.2e-58 231.1 171 69.6
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 4.3e-46 190.3 168 65.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-45 188.7 172 59.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 8.1e-45 186.0 169 57.4
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-44 185.7 172 68.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-44 185.7 172 68.0
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.4e-44 184.5 172 57.0
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 4.0e-44 183.7 172 67.4
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.2e-43 182.2 170 66.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.4e-43 180.6 172 66.3
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.4e-41 175.3 168 57.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 2.5e-41 174.5 175 63.4
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 7.1e-41 172.9 168 53.6
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 6.7e-39 166.4 169 53.8
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 6.7e-39 166.4 169 53.8
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.9e-38 164.9 147 61.9
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.6e-38 162.5 173 52.6
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.6e-38 162.5 173 52.6
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.8e-37 161.0 171 52.6
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.7e-37 160.6 173 51.4
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 4.8e-37 160.2 174 66.1
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 8.2e-37 159.5 173 49.1
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.2e-35 155.6 170 61.8
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 4.5e-35 153.7 170 50.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 4.5e-35 153.7 137 58.4
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 7.6e-35 152.9 173 60.1
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 5.0e-34 150.2 147 68.0
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 5.0e-34 150.2 168 48.2
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 5.0e-34 150.2 173 61.3
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 6.5e-34 149.8 168 47.0
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.4e-33 148.7 171 46.8
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.4e-33 148.7 173 63.0
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.5e-33 147.9 176 48.3
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.6e-32 145.2 167 47.9
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.6e-32 145.2 167 48.5
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 7.9e-32 142.9 167 47.3
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 7.9e-32 142.9 132 55.3
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 3.9e-31 140.6 175 46.9
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 5.1e-31 140.2 167 59.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 5.7e-30 136.7 169 56.2
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 3.7e-29 134.0 170 43.5
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 4.8e-29 133.7 175 46.9
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 6.3e-29 133.3 165 45.5
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.4e-28 132.1 171 42.1
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.8e-28 131.7 171 41.5
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.1e-28 131.0 171 46.8
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 6.9e-28 129.8 181 53.6
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 9.0e-28 129.4 181 41.4
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 9.0e-28 129.4 166 55.4
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.5e-27 128.6 171 41.5
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.4e-27 127.5 182 43.4
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.4e-27 127.5 170 45.9
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.5e-27 127.1 172 45.3
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.2e-26 124.8 182 51.1
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 6.5e-26 123.2 180 41.1
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 1.4e-25 122.1 174 43.1
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.9e-25 121.7 169 40.8
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.9e-25 121.7 167 55.1
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 2.5e-25 121.3 124 48.4
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 2.5e-25 121.3 96 60.4
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 2.5e-25 121.3 137 50.4
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 9.4e-25 119.4 156 44.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.2e-24 119.0 169 41.4
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.2e-24 119.0 169 41.4
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.2e-24 119.0 138 47.8
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.6e-24 118.6 138 47.1
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.6e-24 118.6 216 38.0
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 1.4e-23 115.5 169 40.2
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 1.4e-23 115.5 169 40.2
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.8e-23 115.2 189 49.2
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 2.3e-23 114.8 154 57.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 5.1e-23 113.6 185 49.2
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 6.7e-23 113.2 144 47.9
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.0e-22 111.7 151 44.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 2.5e-22 111.3 136 44.9
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 5.7e-22 110.2 135 58.5
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 5.7e-22 110.2 133 48.9
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 1.3e-21 109.0 176 50.0
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.8e-21 107.1 97 53.6
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 8.2e-21 106.3 179 39.7
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 1.4e-20 105.5 125 45.6
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.4e-20 105.5 96 57.3
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 1.8e-20 105.1 142 54.2
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 1.2e-19 102.4 130 48.5
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.0e-18 99.4 157 38.9
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 2.5e-17 94.7 69 65.2
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 5.1e-15 87.0 75 86.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 3.3e-14 84.3 75 54.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 3.1e-12 77.8 145 33.8
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 2.6e-11 74.7 75 50.7
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.6e-08 65.5 47 66.0


User provided reference genes

Program Settings