Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 5.0e-249 864.0 443 100.0
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.9e-233 811.2 443 93.9
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.9e-187 659.4 448 76.3
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 4.1e-174 615.1 456 72.1
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.6e-173 612.5 456 71.9
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 4.2e-171 605.1 463 68.5
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.0e-169 600.5 448 70.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 5.7e-168 594.7 457 70.5
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 8.2e-167 590.9 453 68.9
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.9e-164 582.4 452 69.7
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.2e-162 577.0 429 71.3
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 1.1e-160 570.5 455 66.8
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.5e-160 570.1 455 65.7
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.7e-159 566.6 455 65.9
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.2e-159 566.2 449 67.3
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.8e-159 565.8 454 66.1
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 2.8e-159 565.8 460 66.3
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.4e-158 562.8 439 67.4
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.1e-158 562.0 452 67.0
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 7.0e-158 561.2 452 67.3
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.0e-158 561.2 455 65.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.2e-157 560.5 444 69.1
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.2e-157 560.5 434 68.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 5.9e-157 558.1 393 72.8
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.7e-156 556.6 450 67.1
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.2e-156 556.2 413 69.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.5e-155 551.6 450 66.9
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.2e-154 550.4 450 66.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.7e-154 549.3 429 66.7
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 5.2e-153 545.0 443 66.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.4e-152 542.3 443 64.3
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.3e-151 540.4 451 64.7
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.8e-150 536.6 447 63.5
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 4.1e-150 535.4 456 62.9
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.1e-150 535.4 388 69.6
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 2.7e-149 532.7 449 63.3
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 3.5e-149 532.3 459 63.4
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 4.2e-147 525.4 458 61.4
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 4.8e-143 511.9 437 63.8
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 5.9e-141 505.0 407 63.9
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 7.7e-141 504.6 394 65.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.3e-140 503.8 433 61.0
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.1e-138 495.0 451 60.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 5.2e-137 491.9 452 60.4
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 5.2e-137 491.9 456 59.6
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 6.8e-137 491.5 452 60.0
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 8.9e-137 491.1 449 63.0
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 2.0e-136 490.0 434 61.5
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.6e-136 489.6 449 59.7
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.6e-136 489.6 449 59.7
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.3e-135 487.3 452 59.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.3e-135 487.3 394 62.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 4.9e-135 485.3 450 60.2
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 4.9e-135 485.3 454 60.6
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-134 483.4 455 60.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.4e-134 483.0 456 58.8
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.4e-134 481.9 455 59.8
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.0e-134 481.5 451 59.9
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 9.2e-134 481.1 459 59.3
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.6e-133 480.3 446 57.8
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-131 473.8 450 58.2
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 2.5e-131 473.0 459 58.8
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 4.3e-131 472.2 445 57.8
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 1.2e-130 470.7 440 60.5
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.8e-130 469.5 447 57.5
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 6.1e-130 468.4 449 58.1
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 6.1e-130 468.4 394 60.9
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.0e-129 467.6 463 56.2
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 4.0e-129 465.7 448 59.2
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.6e-128 463.0 420 60.5
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 4.4e-128 462.2 330 71.5
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 7.5e-128 461.5 459 57.1
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 3.7e-127 459.1 409 59.9
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.9e-126 456.8 458 55.0
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.1e-126 455.7 458 55.5
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 9.2e-126 454.5 399 61.9
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 3.5e-125 452.6 394 58.6
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.7e-124 450.3 467 54.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.3e-124 449.9 459 54.5
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.3e-124 449.9 456 54.2
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 8.6e-124 448.0 443 56.2
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.1e-123 447.6 462 57.4
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 3.3e-123 446.0 425 56.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.6e-122 443.7 464 53.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.6e-122 443.7 453 55.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 2.1e-122 443.4 453 55.0
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 6.2e-122 441.8 410 57.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.6e-120 436.4 346 63.9
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 5.8e-120 435.3 403 58.3
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 9.8e-120 434.5 462 53.5
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 3.7e-119 432.6 454 54.4
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 3.7e-119 432.6 454 54.4
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.7e-117 426.4 409 57.9
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.6e-117 425.6 459 52.9
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.1e-115 421.0 458 54.6
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.6e-114 417.2 403 55.3
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.1e-113 414.5 397 57.9
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.6e-112 409.8 379 57.8
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.9e-111 406.4 347 62.8
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 8.6e-108 394.8 315 67.9
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.1e-107 394.4 346 59.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 9.6e-107 391.3 413 54.2
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.6e-106 389.4 383 55.6
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 4.4e-104 382.5 446 51.6
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 2.4e-97 360.1 434 49.8
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 2.0e-96 357.1 339 59.3
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.3e-92 344.4 254 68.9
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 8.1e-90 335.1 365 56.4
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 8.4e-87 325.1 413 46.5
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 5.1e-84 315.8 227 70.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 3.3e-83 313.2 369 52.6
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 7.1e-78 295.4 411 44.5
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 3.0e-76 290.0 432 44.2
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 6.9e-73 278.9 454 46.3
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.0e-71 275.0 311 55.0
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 4.8e-66 256.1 208 66.3
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 2.2e-63 247.3 231 58.0
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 7.4e-59 232.3 392 38.5
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.1e-57 228.4 394 37.6
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.4e-52 211.5 402 37.3
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.4e-49 200.7 410 35.4
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 7.2e-30 136.0 107 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.4e-25 119.8 258 36.4
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 2.0e-24 117.9 424 29.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 8.0e-21 105.9 81 65.4
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.8e-20 104.8 173 38.2
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.1e-17 95.5 209 33.0
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 4.1e-17 93.6 401 27.7
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 1.6e-16 91.7 238 31.9
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.7e-15 88.2 159 35.8
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 3.7e-10 70.5 80 47.5


User provided reference genes

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