Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 0.0e+00 1084.7 537 100.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 6.5e-235 817.4 509 80.0
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 2.8e-217 758.8 385 96.9
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.0e-216 756.9 506 74.5
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 6.4e-214 747.7 506 73.1
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 2.5e-210 735.7 483 71.6
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 3.3e-210 735.3 501 72.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 3.6e-209 731.9 502 71.9
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 6.2e-209 731.1 495 69.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 8.1e-209 730.7 513 70.6
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.4e-208 729.9 504 71.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 4.0e-208 728.4 494 69.6
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 6.8e-208 727.6 510 69.4
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.6e-207 725.7 492 71.3
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 7.5e-207 724.2 512 69.5
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.7e-206 723.0 507 70.8
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.2e-206 722.6 503 71.0
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.2e-206 722.6 503 71.0
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.2e-206 722.6 503 70.6
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 8.3e-206 720.7 501 70.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.4e-205 719.2 504 69.6
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 2.4e-205 719.2 508 69.5
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.2e-205 718.8 505 70.5
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.2e-205 718.8 500 70.2
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.1e-205 718.4 503 70.6
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 4.1e-205 718.4 503 70.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 4.1e-205 718.4 500 69.4
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 5.4e-205 718.0 510 68.2
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 9.2e-205 717.2 502 69.7
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 2.7e-204 715.7 502 69.3
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 3.0e-203 712.2 536 64.9
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 3.3e-202 708.8 502 68.7
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 7.3e-202 707.6 508 69.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 6.8e-200 701.0 507 68.0
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.6e-199 699.1 500 67.4
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 5.8e-199 698.0 512 68.2
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 9.9e-199 697.2 440 77.0
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 3.2e-197 692.2 504 66.5
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 7.1e-197 691.0 506 67.2
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.2e-196 690.3 506 67.2
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.1e-196 689.5 504 67.9
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 3.5e-196 688.7 504 68.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 3.5e-196 688.7 508 65.9
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 3.5e-196 688.7 506 67.4
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.6e-196 688.3 484 69.2
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.7e-195 686.4 519 65.9
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.9e-195 685.3 509 65.8
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 8.6e-195 684.1 506 66.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 9.6e-194 680.6 513 65.7
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.6e-193 678.7 503 65.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 8.1e-193 677.6 501 65.3
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.4e-192 676.8 513 65.7
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 3.1e-192 675.6 500 67.0
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.6e-191 672.5 485 67.6
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.7e-190 669.8 502 65.7
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-189 667.2 492 66.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-189 667.2 492 66.9
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 2.4e-189 666.0 498 65.7
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 3.2e-189 665.6 500 65.6
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 5.4e-189 664.8 506 65.8
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.7e-188 662.5 502 65.7
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 4.6e-188 661.8 498 65.1
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.0e-187 660.6 509 64.6
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 3.9e-187 658.7 498 65.5
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 5.1e-187 658.3 498 65.5
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.6e-186 654.8 485 64.7
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 9.6e-186 654.1 522 64.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 6.9e-184 647.9 524 61.6
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 5.8e-183 644.8 507 62.9
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 2.2e-182 642.9 497 65.0
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.4e-182 641.3 441 69.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.1e-181 640.6 474 66.9
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.1e-181 640.6 497 63.0
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.4e-181 639.4 426 72.5
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 3.2e-181 639.0 440 70.5
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 4.6e-180 635.2 508 62.8
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.9e-178 629.8 506 62.3
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 7.6e-175 617.8 486 63.8
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.4e-173 613.6 402 73.9
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.0e-171 607.4 524 60.9
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.3e-170 602.4 512 58.4
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.1e-168 597.4 506 60.5
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.3e-168 595.1 553 56.4
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 7.6e-167 591.3 485 58.8
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 9.3e-165 584.3 390 72.3
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 9.3e-165 584.3 390 72.3
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 3.9e-163 578.9 387 74.4
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 5.1e-163 578.6 501 58.5
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 3.4e-159 565.8 387 72.4
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 4.5e-159 565.5 386 70.7
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 4.5e-159 565.5 428 65.2
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 6.5e-158 561.6 430 64.7
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.0e-150 537.7 502 54.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.9e-149 533.5 403 66.5
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 2.5e-149 533.1 502 56.0
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.6e-148 528.9 395 67.3
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.9e-148 528.1 465 57.6
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.0e-147 527.7 458 56.1
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.4e-144 517.3 506 54.5
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.3e-137 494.2 351 68.9
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 4.5e-135 485.7 321 74.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.5e-133 480.7 396 61.4
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.0e-131 473.0 491 50.7
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 2.6e-130 469.9 263 87.5
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.1e-128 464.5 360 63.9
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.5e-127 459.1 338 67.2
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 3.2e-125 453.0 460 52.0
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.0e-123 446.0 347 62.5
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 4.0e-123 446.0 524 47.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-116 424.5 385 54.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.0e-115 419.9 326 63.5
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.2e-114 417.9 514 44.0
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.4e-112 409.1 257 75.9
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.9e-96 357.5 303 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.4e-96 357.1 486 38.3
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.6e-94 349.0 510 41.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 8.9e-91 338.6 276 59.1
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-85 321.2 384 45.3
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.0e-78 297.0 213 69.5
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.5e-77 294.7 199 66.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.6e-68 263.5 467 36.0
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 8.7e-62 242.3 160 73.1
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.0e-49 202.2 195 48.7
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.7e-49 201.4 117 85.5
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.7e-49 201.4 132 72.0
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.6e-42 177.6 97 89.7
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.1e-38 163.3 124 64.5
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.3e-37 160.2 124 63.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.8e-35 154.8 120 57.5
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 3.2e-32 144.1 115 66.1
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.2e-31 142.1 119 58.8
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.4e-26 124.0 118 53.4
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.8e-22 111.7 87 63.2
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.3e-20 103.2 80 62.5
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 5.9e-18 96.7 97 53.6
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.3e-17 95.5 72 63.9
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.0e-11 73.2 69 52.2


User provided reference genes

Program Settings