Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006278 Carpinus fangiana HOM05D000153 ORTHO05D028590 2.7e-80 302.0 159 100.0
Haze_04532 Corylus avellana HOM05D000153 ORTHO05D028590 1.3e-34 150.2 113 69.9
Haze_02543 Corylus avellana HOM05D000153 ORTHO05D000118 2.1e-24 116.3 157 44.6
Haze_02545 Corylus avellana HOM05D000153 ORTHO05D000118 2.8e-24 115.9 246 35.0
Cfa009910 Carpinus fangiana HOM05D000153 ORTHO05D000118 6.4e-21 104.8 150 44.7
QL01p016521 Quercus lobata HOM05D000153 ORTHO05D000118 7.8e-19 97.8 150 39.3
Dinv16212 Davidia involucrata HOM05D000153 ORTHO05D000118 6.9e-15 84.7 148 35.8
Cfa006277 Carpinus fangiana HOM05D000153 ORTHO05D028590 9.0e-15 84.3 74 64.9
Atru.chr3.3529 Acer truncatum HOM05D000153 ORTHO05D000118 1.5e-14 83.6 148 36.5
Cfa009912 Carpinus fangiana HOM05D000153 ORTHO05D000118 2.0e-14 83.2 150 36.0
Prupe.6G110900 Prunus persica HOM05D000153 ORTHO05D000118 2.6e-14 82.8 148 32.4
FvH4_3g30830 Fragaria vesca HOM05D000153 ORTHO05D000118 4.4e-14 82.0 151 35.1
RcHm_v2.0_Chr5g0057021 Rosa chinensis HOM05D000153 ORTHO05D000118 4.4e-14 82.0 146 36.3
THA.LOC104816431 Tarenaya hassleriana HOM05D000153 ORTHO05D000118 7.6e-14 81.3 158 32.3
Prupe.6G111100 Prunus persica HOM05D000153 ORTHO05D000118 6.4e-13 78.2 148 33.8
CSS0017547 Camellia sinensis var. sinensis HOM05D000153 ORTHO05D000118 8.4e-13 77.8 148 33.8
Cc01_g10390 Coffea canephora HOM05D000153 ORTHO05D000118 8.4e-13 77.8 149 34.9
CiPaw.13G123700 Carya illinoinensis HOM05D000153 ORTHO05D000118 1.4e-12 77.0 153 35.3
Ciclev10031022m.g Citrus clementina HOM05D000153 ORTHO05D000118 1.4e-12 77.0 155 33.5
DCAR_015511 Daucus carota HOM05D000153 ORTHO05D000118 1.9e-12 76.6 148 33.8
FAN25G3457 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.9e-12 76.6 148 31.8
RcHm_v2.0_Chr5g0057001 Rosa chinensis HOM05D000153 ORTHO05D000118 4.2e-12 75.5 154 30.5
MD11G1146900 Malus domestica HOM05D000153 ORTHO05D000118 5.4e-12 75.1 148 32.4
MD11G1147200 Malus domestica HOM05D000153 ORTHO05D000118 1.6e-11 73.6 148 34.5
DCAR_006402 Daucus carota HOM05D000153 ORTHO05D000118 2.1e-11 73.2 158 32.3
FvH4_3g30810 Fragaria vesca HOM05D000153 ORTHO05D000118 3.5e-11 72.4 148 30.4
Oeu029884.1 Olea europaea HOM05D000153 ORTHO05D000118 3.5e-11 72.4 152 33.6
MD03G1126600 Malus domestica HOM05D000153 ORTHO05D000118 6.0e-11 71.6 148 32.4
Cfa006279 Carpinus fangiana HOM05D000153 ORTHO05D028590 7.9e-11 71.2 81 49.4
ClCG03G002570 Citrullus lanatus HOM05D000153 ORTHO05D000118 7.9e-11 71.2 142 31.7
TWI75G0839 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 7.9e-11 71.2 148 32.4
CsaV3_1G013320 Cucumis sativus L. HOM05D000153 ORTHO05D000118 1.0e-10 70.9 149 31.5
RcHm_v2.0_Chr5g0056971 Rosa chinensis HOM05D000153 ORTHO05D000118 1.3e-10 70.5 148 33.8
MD11G1147000 Malus domestica HOM05D000153 ORTHO05D000118 1.7e-10 70.1 148 30.4
Ah.01g003280 Amaranthus hybridus HOM05D000153 ORTHO05D000118 2.3e-10 69.7 152 35.5
Oeu046643.3 Olea europaea HOM05D000153 ORTHO05D000118 2.3e-10 69.7 151 34.4
Haze_23269 Corylus avellana HOM05D000153 ORTHO05D000118 3.0e-10 69.3 107 39.3
Haze_23279 Corylus avellana HOM05D000153 ORTHO05D000118 3.0e-10 69.3 107 38.3
Gohir.D05G107050 Gossypium hirsutum HOM05D000153 ORTHO05D000118 3.0e-10 69.3 151 32.5
Carub.0004s0892 Capsella rubella HOM05D000153 ORTHO05D000118 3.9e-10 68.9 151 33.1
Prupe.6G111300 Prunus persica HOM05D000153 ORTHO05D000118 3.9e-10 68.9 151 30.5
A04p21350 Brassica napus HOM05D000153 ORTHO05D000118 5.1e-10 68.6 154 33.1
BraA04t17701Z Brassica rapa HOM05D000153 ORTHO05D000118 5.1e-10 68.6 154 33.1
Nitab4.5_0002285g0070 Nicotiana tabacum HOM05D000153 ORTHO05D000118 5.1e-10 68.6 148 34.5
Thecc.10G086700 Theobroma cacao HOM05D000153 ORTHO05D000118 5.1e-10 68.6 152 31.6
MELO3C027299.2 Cucumis melo HOM05D000153 ORTHO05D000118 6.6e-10 68.2 154 27.3
Gorai.009G111100 Gossypium raimondii HOM05D000153 ORTHO05D000118 6.6e-10 68.2 151 32.5
Potri.009G006400 Populus trichocarpa HOM05D000153 ORTHO05D000118 6.6e-10 68.2 148 31.8
TWI79G0716 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 6.6e-10 68.2 148 29.7
TWI79G0982 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 6.6e-10 68.2 148 29.7
Nitab4.5_0001634g0010 Nicotiana tabacum HOM05D000153 ORTHO05D000118 8.7e-10 67.8 149 30.9
Sed0008461 Sechium edule HOM05D000153 ORTHO05D000118 8.7e-10 67.8 148 32.4
PGR142G2459 Punica granatum HOM05D000153 ORTHO05D000118 1.1e-09 67.4 153 31.4
GSVIVG01031480001 Vitis vinifera HOM05D000153 ORTHO05D000118 1.1e-09 67.4 148 33.1
CAN.G130.7 Capsicum annuum HOM05D000153 ORTHO05D000118 1.5e-09 67.0 148 33.1
Lj2P1010T16 Lonicera japonica HOM05D000153 ORTHO05D000118 1.5e-09 67.0 148 31.1
PGR102G0268 Punica granatum HOM05D000153 ORTHO05D000118 1.5e-09 67.0 153 29.4
AL4G22030 Arabidopsis lyrata HOM05D000153 ORTHO05D000118 1.9e-09 66.6 151 33.1
Cfa010039 Carpinus fangiana HOM05D000153 ORTHO05D000118 1.9e-09 66.6 152 30.9
Sopen06g006820 Solanum pennellii HOM05D000153 ORTHO05D000118 1.9e-09 66.6 148 32.4
Dinv29369 Davidia involucrata HOM05D000153 ORTHO05D000118 2.5e-09 66.2 148 29.1
Gohir.D08G217900 Gossypium hirsutum HOM05D000153 ORTHO05D000118 2.5e-09 66.2 151 29.1
Peaxi162Scf00056g00132 Petunia axillaris HOM05D000153 ORTHO05D000118 2.5e-09 66.2 151 32.5
AT2G28120 Arabidopsis thaliana HOM05D000153 ORTHO05D000118 3.3e-09 65.9 151 31.8
FvH4_3g30820 Fragaria vesca HOM05D000153 ORTHO05D000118 3.3e-09 65.9 156 29.5
FAN21G0137 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.3e-09 65.9 159 31.4
Thecc.09G350200 Theobroma cacao HOM05D000153 ORTHO05D000118 3.3e-09 65.9 156 29.5
BcaB06g28189 Brassica carinata HOM05D000153 ORTHO05D000118 4.3e-09 65.5 151 31.1
Cfa010290 Carpinus fangiana HOM05D000153 ORTHO05D000118 4.3e-09 65.5 148 30.4
ECA238G0849 Erigeron canadensis HOM05D000153 ORTHO05D000118 4.3e-09 65.5 148 30.4
DCAR_018771 Daucus carota HOM05D000153 ORTHO05D000118 5.6e-09 65.1 149 30.9
Gohir.A08G200700 Gossypium hirsutum HOM05D000153 ORTHO05D000118 5.6e-09 65.1 151 29.1
Gorai.004G231700 Gossypium raimondii HOM05D000153 ORTHO05D000118 5.6e-09 65.1 151 29.1
Nn6g35245 Nelumbo nucifera HOM05D000153 ORTHO05D000118 5.6e-09 65.1 152 28.9
Solyc06g011590.3 Solanum lycopersicum HOM05D000153 ORTHO05D000118 5.6e-09 65.1 148 32.4
Lj2C22G6 Lonicera japonica HOM05D000153 ORTHO05D000118 7.3e-09 64.7 155 30.3
HanXRQChr14g0452521 Helianthus annuus HOM05D000153 ORTHO05D000118 9.6e-09 64.3 149 28.9
Sc09g0005950 Simmondsia chinensis HOM05D000153 ORTHO05D000118 9.6e-09 64.3 148 33.1
Ciclev10028100m.g Citrus clementina HOM05D000153 ORTHO05D000118 1.3e-08 63.9 148 31.8
Cc02_g10750 Coffea canephora HOM05D000153 ORTHO05D000118 1.3e-08 63.9 154 31.2
Haze_23268 Corylus avellana HOM05D000153 ORTHO05D000118 1.3e-08 63.9 103 37.9
Dinv16213 Davidia involucrata HOM05D000153 ORTHO05D000118 1.3e-08 63.9 148 29.1
Manes.11G151700 Manihot esculenta HOM05D000153 ORTHO05D000118 1.3e-08 63.9 149 30.2
Sabra09G0003600 Salix brachista HOM05D000153 ORTHO05D000118 1.3e-08 63.9 148 31.8
MSTRG.17764 Avicennia marina HOM05D000153 ORTHO05D000118 1.6e-08 63.5 151 32.5
QL01p012538 Quercus lobata HOM05D000153 ORTHO05D000118 1.6e-08 63.5 152 28.3
vmacro03258 Vaccinium macrocarpon HOM05D000153 ORTHO05D000118 1.6e-08 63.5 148 29.1
Nitab4.5_0001819g0020 Nicotiana tabacum HOM05D000153 ORTHO05D000118 2.1e-08 63.2 150 30.0
PSO801G0849 Papaver somniferum HOM05D000153 ORTHO05D000118 2.1e-08 63.2 151 29.8
CARHR120960 Cardamine hirsuta HOM05D000153 ORTHO05D000118 2.8e-08 62.8 151 31.8
Hma1.2p1_1762F.1_g301350 Hydrangea macrophylla HOM05D000153 ORTHO05D000118 2.8e-08 62.8 151 30.5
Lj2P1010T6 Lonicera japonica HOM05D000153 ORTHO05D000118 2.8e-08 62.8 149 29.5
BcaC02g08206 Brassica carinata HOM05D000153 ORTHO05D000118 3.6e-08 62.4 158 30.4
A07p18650 Brassica napus HOM05D000153 ORTHO05D000118 3.6e-08 62.4 151 31.1
C04p57280 Brassica napus HOM05D000153 ORTHO05D000118 3.6e-08 62.4 158 30.4
CAN.G459.36 Capsicum annuum HOM05D000153 ORTHO05D000118 3.6e-08 62.4 152 28.3
COL.COLO4_11108 Corchorus olitorius HOM05D000153 ORTHO05D000118 3.6e-08 62.4 151 30.5
Haze_23400 Corylus avellana HOM05D000153 ORTHO05D000118 3.6e-08 62.4 151 28.5
Hma1.2p1_0779F.1_g216680 Hydrangea macrophylla HOM05D000153 ORTHO05D000118 3.6e-08 62.4 152 32.2
Hma1.2p1_2248F.1_g318010 Hydrangea macrophylla HOM05D000153 ORTHO05D000118 3.6e-08 62.4 148 28.4
Sp4g10930 Schrenkiella parvula HOM05D000153 ORTHO05D000118 3.6e-08 62.4 151 30.5
Aqoxy2G02532 Aquilegia oxysepala HOM05D000153 ORTHO05D000118 4.8e-08 62.0 153 27.5
BolC4t27253H Brassica oleracea HOM05D000153 ORTHO05D000118 4.8e-08 62.0 158 30.4
ClCG03G002540 Citrullus lanatus HOM05D000153 ORTHO05D000118 4.8e-08 62.0 162 29.0
Duzib168G0880 Durio zibethinus HOM05D000153 ORTHO05D000118 4.8e-08 62.0 151 31.1
QL01p015290 Quercus lobata HOM05D000153 ORTHO05D000118 4.8e-08 62.0 148 32.4
CANSAT01G1355 Cannabis sativa HOM05D000153 ORTHO05D000118 6.2e-08 61.6 152 30.3
Eucgr.B03936 Eucalyptus grandis HOM05D000153 ORTHO05D000118 6.2e-08 61.6 159 27.7
Eucgr.G02881 Eucalyptus grandis HOM05D000153 ORTHO05D000118 6.2e-08 61.6 150 29.3
Nitab4.5_0000329g0120 Nicotiana tabacum HOM05D000153 ORTHO05D000118 6.2e-08 61.6 150 30.0
THA.LOC104826384 Tarenaya hassleriana HOM05D000153 ORTHO05D000118 6.2e-08 61.6 151 29.8
BcaB02g10142 Brassica carinata HOM05D000153 ORTHO05D000118 8.1e-08 61.2 153 28.1
Potri.004G215600 Populus trichocarpa HOM05D000153 ORTHO05D000118 8.1e-08 61.2 148 26.4
PGSC0003DMG400031078 Solanum tuberosum HOM05D000153 ORTHO05D000118 8.1e-08 61.2 151 31.8
SGA_v2.0_scaffold385G50480 Striga asiatica HOM05D000153 ORTHO05D000118 8.1e-08 61.2 151 31.1
BcaC02g10946 Brassica carinata HOM05D000153 ORTHO05D000118 1.1e-07 60.8 151 30.5
C04p23390 Brassica napus HOM05D000153 ORTHO05D000118 1.1e-07 60.8 151 30.5
BolC4t23841H Brassica oleracea HOM05D000153 ORTHO05D000118 1.1e-07 60.8 151 30.5
Cpa.g.sc1.12 Carica papaya HOM05D000153 ORTHO05D000118 1.1e-07 60.8 148 27.7
Haze_23704 Corylus avellana HOM05D000153 ORTHO05D000118 1.1e-07 60.8 148 29.7
CsaV3_1G013240 Cucumis sativus L. HOM05D000153 ORTHO05D000118 1.1e-07 60.8 155 28.4
Duzib114G0528 Durio zibethinus HOM05D000153 ORTHO05D000118 1.1e-07 60.8 152 31.6
BraA07t29578Z Brassica rapa HOM05D000153 ORTHO05D000118 1.4e-07 60.5 151 31.1
ECA248G3458 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.4e-07 60.5 148 29.1
Lsat_1_v5_gn_1_64520 Lactuca sativa HOM05D000153 ORTHO05D000118 1.8e-07 60.1 153 30.7
Sed0010926 Sechium edule HOM05D000153 ORTHO05D000118 1.8e-07 60.1 154 29.9
TAR633G2033 Trochodendron aralioides HOM05D000153 ORTHO05D000118 1.8e-07 60.1 148 30.4
Aqoxy2G01693 Aquilegia oxysepala HOM05D000153 ORTHO05D000118 2.4e-07 59.7 146 29.5
Thhalv10016458m.g Eutrema salsugineum HOM05D000153 ORTHO05D000118 2.4e-07 59.7 151 30.5
PGSC0003DMG400021048 Solanum tuberosum HOM05D000153 ORTHO05D000118 2.4e-07 59.7 147 30.6
Actinidia07181 Actinidia chinensis HOM05D000153 ORTHO05D000118 3.1e-07 59.3 138 30.4
Aqoxy2G01694 Aquilegia oxysepala HOM05D000153 ORTHO05D000118 5.3e-07 58.5 153 30.7
EL10Ac9g22603 Beta vulgaris HOM05D000153 ORTHO05D000118 5.3e-07 58.5 158 29.1
Sabra04G0146500 Salix brachista HOM05D000153 ORTHO05D000118 5.3e-07 58.5 148 27.0
ClCG03G002550 Citrullus lanatus HOM05D000153 ORTHO05D000118 1.2e-06 57.4 148 27.0
MELO3C004974.2 Cucumis melo HOM05D000153 ORTHO05D000118 1.2e-06 57.4 155 27.1
PSO063G3488 Papaver somniferum HOM05D000153 ORTHO05D000118 1.2e-06 57.4 146 26.7
Cfa010038 Carpinus fangiana HOM05D000153 ORTHO05D000118 1.5e-06 57.0 148 27.7
HanXRQChr11g0346221 Helianthus annuus HOM05D000153 ORTHO05D000118 1.5e-06 57.0 148 27.0
CAN.G546.33 Capsicum annuum HOM05D000153 ORTHO05D000118 2.0e-06 56.6 151 29.1
PSO339G5058 Papaver somniferum HOM05D000153 ORTHO05D000118 2.0e-06 56.6 150 26.7
Peaxi162Scf00086g00125 Petunia axillaris HOM05D000153 ORTHO05D000118 2.0e-06 56.6 162 27.2
Peaxi162Scf00145g00033 Petunia axillaris HOM05D000153 ORTHO05D000118 2.0e-06 56.6 148 29.1
Cfa020887 Carpinus fangiana HOM05D000153 ORTHO05D000118 2.6e-06 56.2 150 30.0
TAR633G0860 Trochodendron aralioides HOM05D000153 ORTHO05D000118 2.6e-06 56.2 148 25.0
Cfa010040 Carpinus fangiana HOM05D000153 ORTHO05D000118 3.4e-06 55.8 138 28.3


User provided reference genes

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