Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 8.5e-134 480.3 241 100.0
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 2.3e-115 419.1 216 97.2
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 8.0e-108 394.0 224 86.6
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 2.9e-105 385.6 224 84.4
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 9.5e-101 370.5 224 81.2
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 6.2e-100 367.9 222 81.1
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.4e-99 366.7 225 82.2
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 8.9e-99 364.0 224 80.4
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 8.9e-99 364.0 224 79.9
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 4.4e-98 361.7 221 81.0
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 7.5e-98 360.9 224 79.0
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 2.9e-97 359.0 221 80.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 2.9e-97 359.0 225 78.7
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 3.2e-96 355.5 224 78.1
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 7.0e-96 354.4 250 74.4
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 9.2e-96 354.0 225 76.4
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 1.2e-95 353.6 224 75.4
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 1.6e-95 353.2 225 76.4
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.6e-95 353.2 205 84.4
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 2.0e-95 352.8 221 78.7
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 4.6e-95 351.7 224 75.9
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 7.8e-95 350.9 224 75.4
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.0e-94 350.5 227 74.0
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 3.0e-94 349.0 223 75.8
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 3.9e-94 348.6 225 75.1
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 3.9e-94 348.6 225 77.3
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 6.6e-94 347.8 225 75.6
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 8.6e-94 347.4 225 78.7
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 1.1e-93 347.1 229 75.1
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.1e-93 347.1 224 75.0
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.9e-93 346.3 225 76.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 2.5e-93 345.9 205 80.5
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 2.5e-93 345.9 225 74.2
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 5.6e-93 344.7 224 75.4
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.2e-92 343.6 225 76.0
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.1e-92 342.8 225 77.8
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 6.2e-92 341.3 225 76.0
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 1.4e-91 340.1 227 77.1
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 1.8e-91 339.7 224 74.6
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 3.1e-91 339.0 222 75.7
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 4.0e-91 338.6 224 74.1
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 5.2e-91 338.2 224 74.1
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 5.2e-91 338.2 224 73.7
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 2.6e-90 335.9 225 74.7
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 4.4e-90 335.1 225 72.4
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 2.9e-89 332.4 225 73.3
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 3.7e-89 332.0 220 73.2
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 4.9e-89 331.6 220 72.3
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 4.9e-89 331.6 224 70.5
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.1e-88 330.5 235 69.8
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 1.1e-88 330.5 226 74.3
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 1.4e-88 330.1 227 70.5
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 5.4e-88 328.2 225 69.3
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 5.4e-88 328.2 227 72.2
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 7.1e-88 327.8 221 72.4
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 1.2e-87 327.0 224 71.9
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 2.1e-87 326.2 256 65.2
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.7e-87 325.9 199 78.9
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 2.7e-87 325.9 227 70.5
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 2.7e-87 325.9 224 70.5
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 3.5e-87 325.5 225 70.2
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 3.5e-87 325.5 224 70.1
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 6.0e-87 324.7 226 72.6
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 6.0e-87 324.7 224 71.4
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 7.8e-87 324.3 224 71.0
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.0e-86 323.9 221 71.5
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 1.3e-86 323.6 224 71.4
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.3e-86 322.8 221 71.0
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 3.0e-86 322.4 239 68.6
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.0e-86 322.4 224 70.5
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 6.6e-86 321.2 196 78.1
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 6.6e-86 321.2 224 70.1
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 1.9e-85 319.7 223 70.0
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.9e-85 319.7 221 71.0
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 2.5e-85 319.3 218 72.9
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 4.3e-85 318.5 224 70.1
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 5.6e-85 318.2 222 72.1
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 7.3e-85 317.8 224 69.6
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 2.1e-84 316.2 224 70.1
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 6.2e-84 314.7 224 69.2
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 3.1e-83 312.4 222 69.8
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 8.9e-83 310.8 228 67.5
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 5.8e-82 308.1 224 67.9
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 5.8e-82 308.1 224 67.9
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 5.8e-82 308.1 224 68.3
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 7.6e-82 307.8 224 67.9
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 7.6e-82 307.8 224 67.9
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 1.3e-81 307.0 228 66.7
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 6.4e-81 304.7 224 67.0
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 1.9e-80 303.1 224 67.0
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 5.4e-80 301.6 225 68.0
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 7.1e-80 301.2 226 66.8
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 6.0e-79 298.1 225 64.4
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 1.0e-78 297.4 224 66.5
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 6.6e-78 294.7 222 67.1
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 4.7e-76 288.5 177 79.7
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 8.9e-75 284.3 225 65.3
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 2.0e-74 283.1 225 66.7
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.3e-70 269.6 227 61.2
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.3e-68 263.8 225 61.8
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.4e-64 250.4 219 53.4
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.2e-63 247.3 186 66.7
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 7.9e-63 244.6 219 56.6
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 3.0e-62 242.7 219 54.8
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.9e-61 240.0 218 54.1
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 5.3e-59 231.9 195 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 2.4e-56 223.0 206 55.3
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 1.0e-49 201.1 210 51.4
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 5.7e-45 185.3 165 55.8
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 7.4e-45 184.9 117 75.2
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.5e-21 107.5 119 51.3
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 3.7e-20 102.8 196 34.7
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 2.5e-16 90.1 224 32.1
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 8.0e-15 85.1 60 68.3
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 8.0e-15 85.1 60 68.3
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.6e-10 70.9 41 78.0


User provided reference genes

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