Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 4.4e-164 581.3 298 100.0
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 4.0e-133 478.4 299 83.3
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 7.6e-124 447.6 296 76.7
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 3.5e-121 438.7 309 76.1
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 4.6e-121 438.3 296 76.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 8.6e-120 434.1 296 75.3
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.9e-119 433.0 296 75.0
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 9.6e-119 430.6 301 73.8
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 1.2e-118 430.3 299 74.9
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 1.2e-118 430.3 299 75.3
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.6e-118 428.7 301 73.1
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.2e-116 423.7 300 71.3
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.7e-115 419.9 305 71.5
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 4.9e-115 418.3 304 73.0
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 1.4e-114 416.8 299 70.9
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 3.2e-114 415.6 291 71.1
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 1.2e-113 413.7 296 70.9
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 2.1e-113 412.9 301 72.4
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 1.0e-112 410.6 289 71.6
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.0e-112 410.6 292 72.3
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 1.3e-112 410.2 304 68.1
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 3.0e-112 409.1 306 72.2
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 3.9e-112 408.7 296 70.6
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 5.1e-112 408.3 293 71.3
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 5.1e-112 408.3 293 70.6
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.1e-112 408.3 308 69.8
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 4.3e-111 405.2 299 70.9
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 5.6e-111 404.8 298 69.8
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 9.6e-111 404.1 307 73.3
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.3e-110 403.7 295 69.8
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 1.6e-110 403.3 294 70.1
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 1.1e-109 400.6 293 69.6
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.4e-109 400.2 267 71.9
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 1.8e-109 399.8 298 70.5
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 2.4e-109 399.4 303 66.7
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 3.1e-109 399.1 287 70.0
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 5.3e-109 398.3 287 70.4
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.2e-108 397.1 298 70.8
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.4e-108 395.6 300 70.3
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 4.4e-108 395.2 300 70.3
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 4.4e-108 395.2 298 70.5
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 4.4e-108 395.2 292 67.5
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 5.8e-108 394.8 300 71.7
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 7.6e-108 394.4 303 67.7
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 9.9e-108 394.0 304 69.4
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.3e-107 393.7 296 70.9
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 2.2e-107 392.9 268 76.5
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 3.8e-107 392.1 353 62.6
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 6.4e-107 391.3 298 67.4
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 8.4e-107 391.0 290 66.9
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 4.2e-106 388.7 301 67.1
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 5.4e-106 388.3 276 69.2
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 7.1e-106 387.9 296 69.6
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.2e-105 387.1 309 68.0
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.1e-105 386.3 318 65.7
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.1e-105 386.3 279 68.8
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 1.0e-104 384.0 280 66.4
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 1.3e-104 383.6 288 66.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.5e-103 380.2 287 66.9
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.5e-103 380.2 318 64.5
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 1.9e-103 379.8 298 69.5
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 5.6e-103 378.3 309 66.0
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.6e-102 376.7 290 67.6
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 2.1e-102 376.3 298 64.8
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.8e-101 373.2 290 65.9
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 3.1e-101 372.5 294 66.3
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 4.0e-101 372.1 305 65.6
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 5.3e-101 371.7 333 61.0
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 9.0e-101 370.9 294 64.6
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 2.6e-100 369.4 294 65.3
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 3.4e-100 369.0 316 66.1
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 5.8e-100 368.2 289 66.4
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 6.4e-99 364.8 286 64.3
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.4e-99 364.8 326 61.0
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.4e-98 363.6 302 66.2
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 2.4e-98 362.8 305 65.6
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 7.1e-98 361.3 306 64.4
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 7.1e-98 361.3 285 67.4
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 2.1e-97 359.8 301 64.8
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 4.6e-97 358.6 290 66.9
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 1.3e-96 357.1 308 64.3
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 2.5e-95 352.8 293 62.1
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 5.6e-95 351.7 277 65.0
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 3.7e-94 349.0 300 62.3
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 4.0e-93 345.5 269 67.7
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 6.5e-91 338.2 310 61.9
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 9.3e-90 334.3 297 60.6
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 4.3e-87 325.5 293 60.4
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 7.4e-87 324.7 297 60.3
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 7.4e-87 324.7 289 62.3
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.6e-84 316.2 296 58.4
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 5.9e-84 315.1 280 59.3
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.8e-83 312.4 245 70.2
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 5.0e-83 312.0 294 57.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 6.9e-77 291.6 301 55.5
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 5.9e-76 288.5 228 63.6
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 2.9e-75 286.2 300 53.0
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.1e-73 280.0 194 70.6
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 8.8e-72 274.6 296 51.7
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.5e-71 273.9 159 91.2
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.8e-70 268.9 183 72.7
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 5.2e-64 248.8 124 98.4
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.5e-63 247.3 197 64.0
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 1.2e-60 237.7 166 72.3
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 1.1e-58 231.1 185 64.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 5.5e-58 228.8 299 47.2
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.8e-56 223.8 303 46.5
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 6.7e-56 221.9 141 72.3
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 8.8e-56 221.5 210 56.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 5.3e-53 212.2 177 66.1
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 5.0e-51 205.7 237 50.6
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.8e-48 197.2 157 64.3
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 3.1e-45 186.4 295 37.6
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.7e-43 180.6 156 64.7
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.5e-42 176.8 298 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.6e-41 174.1 303 35.6
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 3.6e-41 172.9 296 37.8
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 7.5e-39 165.2 158 65.2
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.8e-37 160.6 104 78.8
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.0e-36 157.1 136 64.7
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 2.7e-36 156.8 104 76.0
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 6.4e-30 135.6 89 67.4
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.3e-27 127.1 115 60.0
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 6.2e-25 119.0 90 71.1
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 6.8e-24 115.5 80 76.2
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 7.5e-23 112.1 105 61.0
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 2.0e-20 104.0 229 35.8
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.7e-20 103.6 110 52.7
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 1.1e-18 98.2 107 59.8
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 6.8e-16 89.0 100 51.0
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 2.7e-12 77.0 303 26.7
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 1.3e-11 74.7 89 51.7


User provided reference genes

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