Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006229 Carpinus fangiana HOM05D000094 ORTHO05D001056 1.7e-61 239.2 125 100.0
Haze_04623 Corylus avellana HOM05D000094 ORTHO05D001056 4.1e-23 111.7 149 51.0
Sabra08G0058700 Salix brachista HOM05D000094 ORTHO05D001056 5.6e-20 101.3 134 47.8
CiPaw.07G084000 Carya illinoinensis HOM05D000094 ORTHO05D001056 1.2e-19 100.1 159 42.8
Lalb_Chr19g0126451 Lupinus albus HOM05D000094 ORTHO05D001056 2.6e-17 92.4 128 45.3
Potri.008G078900 Populus trichocarpa HOM05D000094 ORTHO05D001056 7.5e-17 90.9 159 39.0
QL01p052076 Quercus lobata HOM05D000094 ORTHO05D001056 9.8e-17 90.5 159 40.9
Dinv17151 Davidia involucrata HOM05D000094 ORTHO05D001056 1.3e-16 90.1 159 39.0
Medtr7g080810 Medicago truncatula HOM05D000094 ORTHO05D001056 1.2e-14 83.6 136 39.0
vmacro14685 Vaccinium macrocarpon HOM05D000094 ORTHO05D001056 2.3e-13 79.3 78 50.0
Ciclev10014622m.g Citrus clementina HOM05D000094 ORTHO05D001056 1.1e-12 77.0 155 37.4
Thecc.05G114200 Theobroma cacao HOM05D000094 ORTHO05D001056 2.5e-12 75.9 159 37.1
Psat3g101120 Pisum sativum HOM05D000094 ORTHO05D001056 4.3e-12 75.1 151 33.8
arahy.Tifrunner.gnm1.ann1.5B0M6A Arachis hypogaea HOM05D000094 ORTHO05D001056 9.5e-12 73.9 86 46.5
Potri.010G177900 Populus trichocarpa HOM05D000094 ORTHO05D001056 9.5e-12 73.9 87 48.3
Atru.chr10.142 Acer truncatum HOM05D000094 ORTHO05D001056 2.8e-11 72.4 159 34.6
arahy.Tifrunner.gnm1.ann1.H5JCD8 Arachis hypogaea HOM05D000094 ORTHO05D001056 2.8e-11 72.4 86 45.3
Potri.010G178050 Populus trichocarpa HOM05D000094 ORTHO05D001056 4.7e-11 71.6 61 59.0
Glyma.09G246600 Glycine max HOM05D000094 ORTHO05D001056 6.2e-11 71.2 133 35.3
Thecc.01G207000 Theobroma cacao HOM05D000094 ORTHO05D001056 8.1e-11 70.9 156 36.5
ECA248G2114 Erigeron canadensis HOM05D000094 ORTHO05D001056 1.1e-10 70.5 69 50.7
Glyma.18G246400 Glycine max HOM05D000094 ORTHO05D001056 1.1e-10 70.5 134 36.6
Rhsim10G0008400 Rhododendron simsii HOM05D001334 ORTHO05D001119 1.4e-10 70.1 88 44.3
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 1.4e-10 70.1 138 36.2
TPR.G28216 Trifolium pratense HOM05D000094 ORTHO05D001056 1.8e-10 69.7 134 35.8
TAR365G0586 Trochodendron aralioides HOM05D000094 ORTHO05D001056 2.3e-10 69.3 159 34.0
Dinv28788 Davidia involucrata HOM05D000094 ORTHO05D001056 3.1e-10 68.9 159 34.0
Hund02810 Selenicereus undatus HOM05D000094 ORTHO05D001056 3.1e-10 68.9 86 43.0
MELO3C012752.2 Cucumis melo HOM05D000094 ORTHO05D001056 4.0e-10 68.6 145 34.5
Potri.002G240000 Populus trichocarpa HOM05D000094 ORTHO05D001056 4.0e-10 68.6 130 33.8
CSS0009043 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001056 6.8e-10 67.8 129 38.0
CiPaw.13G056000 Carya illinoinensis HOM05D000094 ORTHO05D001056 6.8e-10 67.8 159 33.3
Dinv07628 Davidia involucrata HOM05D000094 ORTHO05D001056 6.8e-10 67.8 62 54.8
Nitab4.5_0007516g0010 Nicotiana tabacum HOM05D000094 ORTHO05D001056 8.9e-10 67.4 146 32.9
HanXRQChr01g0014161 Helianthus annuus HOM05D000094 ORTHO05D001056 1.2e-09 67.0 66 48.5
MBI07_g20241_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D001056 1.5e-09 66.6 136 33.1
TAR636G2748 Trochodendron aralioides HOM05D000094 ORTHO05D001056 1.5e-09 66.6 159 34.6
Hma1.2p1_1218F.1_g267710 Hydrangea macrophylla HOM05D000094 ORTHO05D001056 2.6e-09 65.9 98 40.8
Lj4g0004983 Lotus japonicus HOM05D000094 ORTHO05D001056 3.4e-09 65.5 92 43.5
Hma1.2p1_1368F.1_g278500 Hydrangea macrophylla HOM05D000094 ORTHO05D001056 4.4e-09 65.1 65 52.3
Hma1.2p1_1629F.1_g294500 Hydrangea macrophylla HOM05D000094 ORTHO05D001056 4.4e-09 65.1 65 52.3
Sed0006551 Sechium edule HOM05D000094 ORTHO05D001056 4.4e-09 65.1 78 43.6
CsaV3_7G027070 Cucumis sativus L. HOM05D000094 ORTHO05D001056 5.8e-09 64.7 142 32.4
LjContig00528g0024505 Lotus japonicus HOM05D000094 ORTHO05D001056 7.5e-09 64.3 92 42.4
Migut.D00769 Erythranthe guttata HOM05D000094 ORTHO05D001056 9.9e-09 63.9 159 31.4
Sabra17G0006900 Salix brachista HOM05D000094 ORTHO05D000001 9.9e-09 63.9 97 37.1
Rhsim01G0247300 Rhododendron simsii HOM05D000094 ORTHO05D001056 1.3e-08 63.5 61 50.8
ClCG09G008010 Citrullus lanatus HOM05D000094 ORTHO05D001056 1.7e-08 63.2 75 42.7
ClCG09G012640 Citrullus lanatus HOM05D000094 ORTHO05D001056 1.7e-08 63.2 75 42.7
QL09p045271 Quercus lobata HOM05D000094 ORTHO05D001056 1.7e-08 63.2 160 33.1
HPP92_009183 Vanilla planifolia HOM05D000094 ORTHO05D001056 1.7e-08 63.2 88 42.0
PGR044G0195 Punica granatum HOM05D000094 ORTHO05D001056 2.2e-08 62.8 153 30.1
RcHm_v2.0_Chr6g0282141 Rosa chinensis HOM05D000094 ORTHO05D001056 2.2e-08 62.8 108 39.8
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 2.9e-08 62.4 130 36.2
Oeu064703.1 Olea europaea HOM05D000094 ORTHO05D001056 2.9e-08 62.4 60 48.3
CANSAT25G2933 Cannabis sativa HOM05D000094 ORTHO05D001056 3.7e-08 62.0 62 53.2
CANSAT25G3414 Cannabis sativa HOM05D000094 ORTHO05D001056 3.7e-08 62.0 62 53.2
Duzib133G0296 Durio zibethinus HOM05D000094 ORTHO05D001056 3.7e-08 62.0 160 33.1
Manes.12G055200 Manihot esculenta HOM05D000094 ORTHO05D001056 3.7e-08 62.0 156 30.1
Nn1g09467 Nelumbo nucifera HOM05D000094 ORTHO05D001056 3.7e-08 62.0 161 32.3
Sabra02G0182800 Salix brachista HOM05D000094 ORTHO05D001056 3.7e-08 62.0 153 32.0
HPP92_009177 Vanilla planifolia HOM05D000094 ORTHO05D001056 4.9e-08 61.6 88 40.9
HanXRQChr08g0231551 Helianthus annuus HOM05D000094 ORTHO05D001056 6.4e-08 61.2 135 33.3
Os11g0249900 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D001056 6.4e-08 61.2 131 34.4
Aa31sc757G20 Aethionema arabicum HOM05D000094 ORTHO05D001056 1.1e-07 60.5 153 31.4
Cc01_g15830 Coffea canephora HOM05D000094 ORTHO05D001056 1.1e-07 60.5 61 47.5
Peaxi162Scf01242g00028 Petunia axillaris HOM05D000094 ORTHO05D001056 1.4e-07 60.1 152 30.3
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.9e-07 59.7 121 35.5
Haze_03512 Corylus avellana HOM05D000094 ORTHO05D001056 1.9e-07 59.7 63 50.8
Lj1C104G1 Lonicera japonica HOM05D000094 ORTHO05D001056 1.9e-07 59.7 159 30.2
Nitab4.5_0001348g0090 Nicotiana tabacum HOM05D000094 ORTHO05D001056 1.9e-07 59.7 156 30.1
TPR.G35407 Trifolium pratense HOM05D001169 ORTHO05D000029 1.9e-07 59.7 67 47.8
SGA_v2.0_scaffold21G09347 Striga asiatica HOM05D000168 ORTHO05D001351 2.4e-07 59.3 67 49.3
CiPaw.14G044400 Carya illinoinensis HOM05D000094 ORTHO05D001056 3.2e-07 58.9 159 31.4
Gorai.002G060500 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.2e-07 58.9 62 48.4
Lj3g0009218 Lotus japonicus HOM05D000094 ORTHO05D001056 3.2e-07 58.9 159 30.2
GSVIVG01038240001 Vitis vinifera HOM05D000094 ORTHO05D001056 3.2e-07 58.9 118 37.3
FAN15G3765 Fragaria x ananassa HOM05D000168 ORTHO05D001351 4.1e-07 58.5 67 50.7
FAN20G2242 Fragaria x ananassa HOM05D000168 ORTHO05D001351 4.1e-07 58.5 67 50.7
Sopen12g032550 Solanum pennellii HOM05D000094 ORTHO05D001056 4.1e-07 58.5 128 35.9
TAR633G2282 Trochodendron aralioides HOM05D000094 ORTHO05D001056 4.1e-07 58.5 159 30.8
FAN27G3402 Fragaria x ananassa HOM05D000094 ORTHO05D001056 5.4e-07 58.2 53 49.1
TPR.G29245 Trifolium pratense HOM05D000071 ORTHO05D000029 5.4e-07 58.2 65 44.6
QL10p063273 Quercus lobata HOM05D000094 ORTHO05D001056 7.1e-07 57.8 39 61.5
Sopen12g004670 Solanum pennellii HOM05D000053 ORTHO05D000035 7.1e-07 57.8 97 33.0
Gohir.D05G001200 Gossypium hirsutum HOM05D000033 ORTHO05D001317 9.2e-07 57.4 88 38.6
Gorai.009G001100 Gossypium raimondii HOM05D000033 ORTHO05D001317 9.2e-07 57.4 88 38.6
Nitab4.5_0004982g0010 Nicotiana tabacum HOM05D000094 ORTHO05D001056 9.2e-07 57.4 158 28.5
Aqoxy2G04174 Aquilegia oxysepala HOM05D000094 ORTHO05D001056 1.2e-06 57.0 59 44.1
CSS0030094 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001056 1.2e-06 57.0 158 29.1
Ciclev10014610m.g Citrus clementina HOM05D000094 ORTHO05D001056 1.2e-06 57.0 51 56.9
Cc01_g08320 Coffea canephora HOM05D000053 ORTHO05D000035 1.2e-06 57.0 65 43.1
Lj4C710T6 Lonicera japonica HOM05D000168 ORTHO05D001351 1.2e-06 57.0 67 50.7
PGSC0003DMG400027683 Solanum tuberosum HOM05D000094 ORTHO05D001056 1.2e-06 57.0 59 44.1
GSVIVG01006063001 Vitis vinifera HOM05D000094 ORTHO05D001056 1.2e-06 57.0 156 31.4
Atru.chr6.3514 Acer truncatum HOM05D000094 ORTHO05D001056 1.6e-06 56.6 72 43.1
BcaB02g08649 Brassica carinata HOM05D000053 ORTHO05D000035 1.6e-06 56.6 73 41.1
FAN15G2420 Fragaria x ananassa HOM05D000033 ORTHO05D007915 1.6e-06 56.6 104 35.6
FAN27G0417 Fragaria x ananassa HOM05D000033 ORTHO05D007915 1.6e-06 56.6 104 35.6
Lalb_Chr07g0194631 Lupinus albus HOM05D000094 ORTHO05D001056 1.6e-06 56.6 156 29.5
Phvul.002G217900 Phaseolus vulgaris HOM05D000094 ORTHO05D001056 1.6e-06 56.6 131 33.6
THA.LOC109116913 Tarenaya hassleriana HOM05D000094 ORTHO05D001056 1.6e-06 56.6 134 35.1
Solyc06g082920.3 Solanum lycopersicum HOM05D000094 ORTHO05D001056 2.1e-06 56.2 158 28.5
Duzib147G1056 Durio zibethinus HOM05D000094 ORTHO05D001414 2.7e-06 55.8 81 37.0
Nitab4.5_0010219g0010 Nicotiana tabacum HOM05D000094 ORTHO05D001056 2.7e-06 55.8 77 41.6
PGR083G2659 Punica granatum HOM05D000094 ORTHO05D001056 2.7e-06 55.8 56 51.8
TPR.G21900 Trifolium pratense HOM05D000094 ORTHO05D001056 2.7e-06 55.8 95 33.7
Duzib211G0176 Durio zibethinus HOM05D000094 ORTHO05D001056 3.5e-06 55.5 151 30.5
Eucgr.H00812 Eucalyptus grandis HOM05D000033 ORTHO05D007915 3.5e-06 55.5 103 39.8
Lsat_1_v5_gn_5_176421 Lactuca sativa HOM05D000094 ORTHO05D001056 3.5e-06 55.5 61 45.9
QL10p063390 Quercus lobata HOM05D000094 ORTHO05D001056 3.5e-06 55.5 39 64.1
Sopen06g034280 Solanum pennellii HOM05D000094 ORTHO05D001056 3.5e-06 55.5 157 27.4
CAN.G874.41 Capsicum annuum HOM05D000094 ORTHO05D001056 4.6e-06 55.1 60 43.3
ECA247G2805 Erigeron canadensis HOM05D000150 ORTHO05D001056 4.6e-06 55.1 61 47.5
Gohir.D11G142000 Gossypium hirsutum HOM05D000033 ORTHO05D007915 4.6e-06 55.1 95 35.8
Lj2A1110T56 Lonicera japonica HOM05D000094 ORTHO05D001056 4.6e-06 55.1 158 27.8
QL10p063354 Quercus lobata HOM05D000094 ORTHO05D001056 4.6e-06 55.1 125 33.6
Hund21938 Selenicereus undatus HOM05D000094 ORTHO05D001056 4.6e-06 55.1 142 33.8
SGA_v2.0_scaffold48G18024 Striga asiatica HOM05D000168 ORTHO05D001351 4.6e-06 55.1 67 47.8
vmacro07941 Vaccinium macrocarpon HOM05D001169 ORTHO05D001002 4.6e-06 55.1 75 41.3
FvH4_2g19550 Fragaria vesca HOM05D000033 ORTHO05D007915 6.0e-06 54.7 104 34.6
FAN24G3279 Fragaria x ananassa HOM05D000033 ORTHO05D007915 6.0e-06 54.7 104 34.6
Gorai.007G152400 Gossypium raimondii HOM05D000033 ORTHO05D007915 6.0e-06 54.7 95 35.8
Lj1A82T75 Lonicera japonica HOM05D000033 ORTHO05D007915 6.0e-06 54.7 105 35.2
MD12G1253000 Malus domestica HOM05D000029 ORTHO05D002162 6.0e-06 54.7 93 37.6
Nitab4.5_0001961g0060 Nicotiana tabacum HOM05D000094 ORTHO05D001056 6.0e-06 54.7 142 31.7
QL10p063849 Quercus lobata HOM05D000094 ORTHO05D001056 6.0e-06 54.7 38 68.4
TAR633G2135 Trochodendron aralioides HOM05D000094 ORTHO05D001056 6.0e-06 54.7 158 30.4
Ah.08g209180 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.8e-06 54.3 96 33.3
ATR0720G001 Amborella trichopoda HOM05D010684 ORTHO05D012438 7.8e-06 54.3 76 40.8
C02p13470 Brassica napus HOM05D000033 ORTHO05D000913 7.8e-06 54.3 92 34.8
CSS0030502 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001056 7.8e-06 54.3 63 42.9
Ca_08029_v3 Cicer arietinum L. HOM05D000094 ORTHO05D001056 7.8e-06 54.3 158 28.5
Haze_11546 Corylus avellana HOM05D000029 ORTHO05D002162 7.8e-06 54.3 81 42.0
Duzib138G0138 Durio zibethinus HOM05D000094 ORTHO05D001056 7.8e-06 54.3 61 50.8
FAN19G2109 Fragaria x ananassa HOM05D009798 ORTHO05D001056 7.8e-06 54.3 129 31.8
Glyma.16G079200 Glycine max HOM05D000094 ORTHO05D001056 7.8e-06 54.3 160 30.6
Gohir.A11G135700 Gossypium hirsutum HOM05D000033 ORTHO05D007915 7.8e-06 54.3 95 35.8
MBI07_g44923_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D001056 7.8e-06 54.3 72 43.1
Pp3c4_5010 Physcomitrium patens HOM05D000029 ORTHO05D000010 7.8e-06 54.3 96 34.4
RcHm_v2.0_Chr6g0285321 Rosa chinensis HOM05D000033 ORTHO05D007915 7.8e-06 54.3 105 36.2


User provided reference genes

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