Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 4.4e-242 840.9 428 100.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.8e-227 792.3 429 94.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.9e-192 676.0 427 79.6
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 9.3e-192 673.7 428 79.0
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 6.1e-151 538.1 428 64.3
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.4e-150 537.0 429 64.3
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 5.2e-150 535.0 428 64.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 6.7e-150 534.6 428 62.4
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 7.0e-147 524.6 446 61.7
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.3e-145 520.4 429 63.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 8.5e-145 517.7 428 61.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.0e-142 509.2 428 60.7
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 5.7e-141 505.0 429 61.5
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.3e-140 503.8 429 60.6
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 5.4e-139 498.4 428 61.7
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 5.9e-138 495.0 428 60.5
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.3e-137 493.8 429 59.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.9e-136 490.0 422 58.8
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.6e-135 486.9 440 61.6
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 6.1e-135 485.0 431 58.7
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-134 481.9 426 58.2
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.5e-133 480.3 428 55.6
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 2.6e-133 479.6 429 57.1
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 4.4e-133 478.8 441 60.1
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 7.5e-133 478.0 427 58.5
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.3e-132 477.2 426 57.7
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 3.7e-132 475.7 430 57.9
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.4e-131 473.8 377 64.7
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.1e-131 472.6 423 56.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-128 464.2 426 56.8
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.9e-128 463.4 429 58.7
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.5e-128 463.0 425 55.5
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 7.3e-128 461.5 428 55.8
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.6e-127 460.3 428 57.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.1e-127 458.4 430 56.3
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.4e-126 457.2 431 56.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.6e-125 453.0 428 55.1
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.8e-125 451.8 401 61.6
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 8.3e-124 448.0 393 59.5
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.4e-123 447.2 428 57.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.4e-123 447.2 394 60.4
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.4e-123 446.4 428 56.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 3.2e-123 446.0 429 54.1
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.2e-123 446.0 430 56.3
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.2e-123 446.0 429 55.5
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 5.4e-123 445.3 429 54.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.2e-122 444.1 377 59.2
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 7.8e-122 441.4 428 53.5
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 7.8e-122 441.4 432 57.6
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.3e-121 440.7 429 52.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 3.0e-121 439.5 428 53.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 6.6e-121 438.3 429 52.9
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 3.3e-120 436.0 429 55.7
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 4.3e-120 435.6 429 55.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 7.3e-120 434.9 428 53.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.0e-119 431.4 426 54.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.1e-118 431.0 429 52.4
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 4.0e-118 429.1 429 54.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.2e-117 427.6 429 53.6
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.5e-117 427.2 431 52.4
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.4e-117 426.0 430 55.1
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 4.4e-117 425.6 428 53.5
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 5.8e-117 425.2 429 50.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.2e-116 423.3 428 53.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.9e-116 422.9 393 56.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.9e-115 420.2 430 53.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.9e-115 420.2 469 49.0
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.2e-115 419.5 429 54.1
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 4.1e-115 419.1 430 53.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 5.4e-115 418.7 429 53.6
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 1.6e-114 417.2 429 49.9
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-114 417.2 429 53.4
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.7e-114 416.4 430 50.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 4.6e-114 415.6 433 51.7
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 7.8e-114 414.8 421 54.2
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.3e-113 414.1 433 51.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.6e-113 411.4 419 56.3
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 7.3e-112 408.3 437 51.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.1e-111 406.8 430 51.6
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 4.7e-111 405.6 432 50.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 8.1e-111 404.8 428 53.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 8.1e-111 404.8 432 50.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.1e-110 404.4 428 51.4
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.2e-109 401.0 430 53.0
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.2e-109 401.0 330 61.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.5e-109 400.6 428 51.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.9e-108 396.4 427 48.9
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 3.7e-108 396.0 422 50.0
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 8.3e-108 394.8 376 55.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 2.1e-106 390.2 433 49.2
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.7e-106 389.8 367 56.7
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-105 387.9 428 50.5
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.0e-105 386.3 422 50.0
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.5e-104 384.0 422 50.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 5.6e-104 382.1 462 46.5
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.2e-101 374.4 470 46.2
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 7.1e-99 365.2 421 48.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 4.6e-98 362.5 440 47.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 3.0e-97 359.8 390 50.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.1e-96 357.8 395 47.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.9e-96 357.1 431 46.9
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.2e-93 347.8 428 47.0
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.6e-93 346.7 421 45.8
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.6e-90 337.4 377 50.9
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 3.5e-90 336.3 432 43.8
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.3e-87 327.8 376 48.7
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 9.0e-78 295.0 430 41.4
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.8e-77 292.4 430 40.7
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 6.4e-76 288.9 420 41.9
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.5e-75 287.0 344 50.0
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 9.0e-70 268.5 212 63.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 7.1e-67 258.8 378 38.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.3e-63 248.1 361 38.0
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 6.7e-57 225.7 191 57.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.5e-56 224.6 210 54.8
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.0e-56 224.2 258 49.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.4e-53 213.4 425 32.5
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.2e-50 204.9 344 37.5
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 4.4e-48 196.4 156 61.5
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 6.3e-47 192.6 393 34.6
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 8.2e-47 192.2 429 31.5
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 7.7e-45 185.7 436 32.3
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 6.5e-44 182.6 450 30.9
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 8.0e-42 175.6 431 30.9
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 6.3e-39 166.0 456 30.9
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.1e-38 165.2 459 29.8
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.5e-37 159.8 491 27.5
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 4.2e-35 153.3 405 29.6
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.8e-33 147.9 442 29.6
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.2e-27 127.1 106 55.7
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-24 118.2 494 26.1
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.0e-24 117.9 228 34.2
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 8.3e-23 112.5 210 34.3
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-19 101.7 88 56.8
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.2e-18 98.6 72 62.5
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.6e-18 97.1 243 31.7
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 6.1e-18 96.3 76 60.5
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.9e-12 77.4 211 28.9
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 4.3e-11 73.6 56 57.1
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 4.3e-11 73.6 63 54.0
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.0e-10 69.3 59 61.0
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.4e-06 56.6 100 39.0


User provided reference genes

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