Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 4.1e-88 328.2 183 100.0
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 2.5e-61 239.2 129 96.9
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 3.4e-58 228.8 183 71.6
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 4.1e-56 221.9 182 70.9
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 1.4e-51 206.8 183 67.2
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 1.8e-51 206.5 184 63.6
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 5.4e-48 194.9 184 61.4
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 5.4e-48 194.9 186 61.8
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 2.1e-47 193.0 185 61.6
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 4.6e-47 191.8 184 63.6
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 7.8e-47 191.0 184 61.4
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.7e-46 189.9 184 60.9
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 3.9e-46 188.7 184 59.8
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 1.1e-45 187.2 184 60.9
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 2.5e-45 186.0 184 64.1
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 5.6e-45 184.9 183 61.2
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 5.6e-45 184.9 187 59.4
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 7.3e-45 184.5 184 59.8
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 1.2e-44 183.7 187 63.1
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 1.2e-44 183.7 184 58.2
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 2.1e-44 183.0 184 60.9
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 2.1e-44 183.0 185 60.5
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 1.1e-43 180.6 187 62.6
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 2.4e-43 179.5 184 58.7
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 5.2e-43 178.3 185 59.5
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 9.0e-43 177.6 180 63.9
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 1.2e-42 177.2 187 57.8
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 2.0e-42 176.4 186 58.6
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 3.4e-42 175.6 186 62.4
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 4.4e-42 175.3 184 58.2
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 9.9e-42 174.1 184 57.6
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 1.3e-41 173.7 181 61.3
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.7e-41 173.3 184 57.1
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 1.7e-41 173.3 183 59.0
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 1.7e-41 173.3 194 60.8
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 1.7e-41 173.3 187 58.3
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 2.9e-41 172.6 184 57.6
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 6.4e-41 171.4 184 60.3
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 1.1e-40 170.6 181 60.8
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 1.9e-40 169.9 184 62.0
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 2.4e-40 169.5 194 55.2
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 9.3e-40 167.5 195 53.8
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 9.3e-40 167.5 184 54.3
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 3.5e-39 165.6 185 56.2
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 4.6e-39 165.2 121 74.4
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 6.6e-38 161.4 181 57.5
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 6.6e-38 161.4 184 54.9
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 8.7e-38 161.0 185 60.0
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 1.5e-37 160.2 181 57.5
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 3.3e-37 159.1 184 53.8
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 6.2e-36 154.8 127 66.9
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 1.5e-34 150.2 184 53.3
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 1.5e-34 150.2 115 69.6
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 5.8e-34 148.3 186 50.5
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 9.9e-34 147.5 124 66.1
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 9.9e-34 147.5 199 50.8
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 2.4e-32 142.9 184 50.0
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 4.2e-32 142.1 192 56.2
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 4.2e-32 142.1 192 50.0
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 3.9e-30 135.6 184 50.5
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 1.5e-29 133.7 185 54.6
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 1.5e-29 133.7 184 48.9
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 7.4e-29 131.3 139 54.7
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 7.4e-29 131.3 184 50.0
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 1.3e-28 130.6 130 55.4
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 3.7e-28 129.0 158 51.3
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 6.2e-28 128.3 195 46.2
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 6.2e-28 128.3 192 46.4
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 6.2e-28 128.3 130 55.4
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 1.1e-27 127.5 137 53.3
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 2.4e-27 126.3 135 53.3
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.4e-27 126.3 146 50.7
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.4e-27 126.3 146 50.7
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.4e-27 126.3 146 50.7
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 3.1e-27 125.9 135 53.3
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 3.1e-27 125.9 135 53.3
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 4.0e-27 125.6 137 53.3
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 5.3e-27 125.2 138 55.1
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 6.9e-27 124.8 138 53.6
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 1.2e-26 124.0 131 54.2
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 1.5e-26 123.6 130 54.6
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 9.9e-26 120.9 183 48.1
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 4.9e-25 118.6 121 60.3
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 4.9e-25 118.6 186 45.7
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 8.4e-25 117.9 152 51.3
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 1.9e-24 116.7 148 51.4
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.6e-23 113.6 193 44.0
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 3.9e-22 109.0 155 50.3
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 5.1e-22 108.6 183 45.9
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 8.7e-22 107.8 198 43.9
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 2.5e-21 106.3 190 42.6
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 1.6e-20 103.6 127 50.4
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.8e-20 102.8 194 41.8
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 4.8e-20 102.1 194 40.7
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 1.3e-17 94.0 114 48.2
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.4e-16 90.5 195 40.0
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 2.5e-16 89.7 175 40.0
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 1.0e-14 84.3 190 37.9
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 6.7e-14 81.6 74 63.5
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 1.5e-13 80.5 183 38.8
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.9e-13 80.1 135 44.4
SEGI_27286 Sequoiadendron giganteum HOM05D007386 ORTHO05D009210 1.8e-11 73.6 79 49.4
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 5.3e-11 72.0 183 37.7
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 1.5e-10 70.5 87 46.0
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 5.9e-10 68.6 160 35.0
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 3.8e-09 65.9 183 37.7
Cre17.g717700 Chlamydomonas reinhardtii HOM05D007386 ORTHO05D009210 9.4e-08 61.2 130 34.6
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 9.4e-08 61.2 179 35.8


User provided reference genes

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