Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.3e-111 406.4 207 100.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.1e-104 382.5 207 94.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 4.1e-60 235.3 212 64.6
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.0e-59 233.0 195 65.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.9e-58 229.2 215 60.9
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.9e-57 226.5 215 62.8
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 2.5e-57 226.1 213 62.0
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 5.5e-57 224.9 211 61.6
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.6e-56 223.4 218 61.9
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.6e-56 223.4 213 63.8
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.1e-56 223.0 205 63.4
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.7e-56 222.6 212 60.4
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.3e-55 219.5 216 58.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.5e-54 216.9 204 60.8
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.5e-54 216.9 216 57.9
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.0e-54 216.5 215 60.9
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.4e-54 215.7 206 61.2
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.4e-54 215.7 216 58.3
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.4e-54 215.3 204 60.8
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.4e-54 215.3 209 58.4
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.5e-54 214.5 209 62.7
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.2e-53 213.0 216 57.4
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.7e-53 212.2 227 55.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.8e-53 211.8 214 57.0
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.4e-52 210.3 214 59.3
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.8e-52 209.9 217 57.6
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.1e-52 208.8 209 61.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 4.1e-52 208.8 217 58.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 7.0e-52 208.0 215 59.1
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.1e-52 207.6 212 59.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 9.1e-52 207.6 212 58.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-51 207.2 209 60.8
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.6e-51 206.8 216 58.8
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 2.0e-51 206.5 211 61.6
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.0e-51 206.5 206 58.3
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.0e-51 206.5 206 58.3
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.0e-51 206.5 207 61.8
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.5e-51 205.7 210 58.1
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 3.5e-51 205.7 211 61.6
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 4.5e-51 205.3 210 59.0
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 4.5e-51 205.3 214 57.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 3.8e-50 202.2 208 60.1
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 5.0e-50 201.8 206 58.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.5e-49 198.4 209 55.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 6.8e-47 191.4 211 57.8
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.9e-47 191.0 210 60.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.2e-46 190.7 209 56.0
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.6e-46 189.5 208 56.7
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 3.4e-46 189.1 209 55.0
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.4e-46 188.7 209 58.4
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.7e-46 188.3 208 54.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.2e-45 186.4 209 55.5
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 2.2e-45 186.4 224 55.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.8e-45 186.0 216 55.1
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.3e-45 184.9 213 55.9
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.3e-45 184.5 212 59.4
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 3.1e-44 182.6 218 52.3
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.1e-44 182.2 206 52.9
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 4.1e-44 182.2 206 54.9
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 5.4e-44 181.8 208 56.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 5.4e-44 181.8 216 50.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.0e-44 181.4 210 53.3
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-43 180.6 211 53.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-43 180.6 208 52.9
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.2e-43 180.6 207 54.1
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 2.0e-43 179.9 215 52.6
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.0e-43 179.9 211 54.5
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.0e-43 179.9 216 53.2
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.0e-43 179.9 206 55.8
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.7e-43 179.5 216 51.4
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.5e-43 179.1 209 53.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.5e-43 179.1 214 53.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.5e-43 178.7 233 53.6
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.0e-42 177.6 219 50.7
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.3e-42 177.2 211 57.8
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.3e-42 177.2 212 54.7
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.3e-42 176.4 209 54.1
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 2.3e-42 176.4 217 51.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 3.8e-42 175.6 213 52.1
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.8e-42 175.6 216 51.9
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 5.0e-42 175.3 209 54.5
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.5e-41 172.9 213 53.1
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 5.6e-41 171.8 213 58.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 5.6e-41 171.8 213 52.6
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 9.5e-41 171.0 206 52.9
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.6e-40 170.2 209 54.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.1e-40 169.9 211 54.0
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.8e-40 169.5 209 51.7
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 6.1e-40 168.3 208 54.3
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.4e-39 167.2 210 54.8
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.8e-39 166.8 208 52.4
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 8.9e-39 164.5 207 49.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.2e-38 164.1 210 50.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.5e-38 163.7 198 56.6
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.6e-38 162.9 212 50.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 4.4e-38 162.2 213 51.6
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 5.8e-38 161.8 222 50.5
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 7.5e-38 161.4 224 48.2
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.7e-37 159.1 209 48.3
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 6.4e-37 158.3 207 50.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-36 157.1 184 52.2
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 4.1e-36 155.6 200 51.0
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.1e-36 155.6 213 44.6
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.2e-35 154.1 215 45.1
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.6e-35 153.7 213 45.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 4.6e-35 152.1 213 44.6
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.3e-34 150.6 242 45.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.3e-34 150.6 214 50.9
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.3e-34 150.6 215 45.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 5.0e-34 148.7 213 45.1
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.0e-34 148.7 204 49.0
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.6e-34 148.3 206 48.5
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 6.6e-34 148.3 214 48.1
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.5e-33 147.1 214 49.1
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.5e-33 147.1 214 48.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.9e-33 146.7 209 48.8
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 3.3e-33 146.0 208 49.5
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 4.3e-33 145.6 210 48.1
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 5.6e-33 145.2 222 51.4
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 7.3e-33 144.8 208 48.6
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 9.5e-33 144.4 211 47.4
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 9.5e-33 144.4 174 52.3
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.6e-32 143.7 198 49.0
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 3.6e-32 142.5 214 48.1
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 6.2e-32 141.7 212 48.6
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 8.0e-32 141.4 217 44.7
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.3e-31 139.8 218 42.7
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.8e-30 135.2 183 48.6
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.3e-29 134.0 246 41.1
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 6.4e-29 131.7 224 47.8
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.1e-28 131.0 300 35.7
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-28 130.6 210 44.3
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.4e-28 130.6 208 46.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.1e-28 129.0 209 45.0
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 5.4e-28 128.6 184 46.7
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.7e-26 123.6 208 45.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.5e-25 120.6 206 43.7
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.5e-25 119.8 207 43.0
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.8e-23 113.6 208 41.3
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 8.9e-23 111.3 207 41.5
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 8.9e-23 111.3 199 42.7
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 8.9e-23 111.3 207 41.5
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 8.9e-23 111.3 153 48.4
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.2e-22 110.9 208 42.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 4.4e-22 109.0 210 41.0
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.3e-21 107.5 127 54.3
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-21 107.1 167 43.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 6.4e-21 105.1 210 39.5
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 6.4e-21 105.1 213 40.8
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.7e-19 99.8 276 34.1
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 7.8e-19 98.2 187 40.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.0e-18 97.8 181 39.8
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.9e-17 93.6 213 38.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 2.1e-16 90.1 166 43.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.8e-16 89.7 214 38.3
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 8.9e-15 84.7 200 40.0
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.5e-14 84.0 60 70.0
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.2e-13 80.1 82 61.0
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 6.4e-13 78.6 58 69.0
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 6.4e-13 78.6 116 50.9
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 9.2e-12 74.7 157 40.1
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.6e-11 73.9 84 53.6
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 4.3e-09 65.9 48 70.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 5.6e-09 65.5 81 54.3
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 1.1e-07 61.2 101 46.5
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 4.4e-06 55.8 97 44.3
SMO347G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 9.9e-06 54.7 87 40.2


User provided reference genes

Program Settings